View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18089_low_17 (Length: 430)
Name: NF18089_low_17
Description: NF18089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18089_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 18 - 429
Target Start/End: Original strand, 44028800 - 44029193
Alignment:
| Q |
18 |
gtaagtattcacgagaacattattattgctaatgaaattaatcatagtatgaataagaagattgaaaatattggacactttgctatttaaggggatttaa |
117 |
Q |
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| T |
44028800 |
gtaagtattcacgagaacattattattgctaatgaaagtaatcatagtatgaataagaagattgaaaatattggacactttgctatttaaggggatttaa |
44028899 |
T |
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| Q |
118 |
ctaaggcttgtaacatttagtcaaggnnnnnnnnnnctaaggcatgtgacatgttgtgctggtcatttattgtgctggtcatttattcagtatattatgt |
217 |
Q |
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| T |
44028900 |
ctaaggcttgtaacatttagtcaaggaaaaaaaa--ctaaggcatgtgacatgttgt----------------gctggtcatttattcagtatattatgt |
44028981 |
T |
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| Q |
218 |
gaagttggtttaccagataattaaattaaggacatgattctgattggatgttacgagtgttcattcatatgtcaagtgaaaggtgttgagagctgataga |
317 |
Q |
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| T |
44028982 |
gaagttggtttaccagataattcaattaaggacatgattcagattggatgttacgagtgttcattcatatgtcaagtgaaaggtgttgagagctgataga |
44029081 |
T |
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| Q |
318 |
agtggtcgaacaatgtttcatttagtatttatggatgatttatttagtttggtcaaacaacatatccacaaacgcattcattaacaccgggtgtcaatgg |
417 |
Q |
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|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | || ||| | ||||||||||| |
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| T |
44029082 |
agtggtcgaataatgtctcatttagtatttatggatgatttatttagtttggtcaaacaacatatccacaaaagcatccgttcacatcaggtgtcaatgg |
44029181 |
T |
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