View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18089_low_2 (Length: 662)
Name: NF18089_low_2
Description: NF18089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18089_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 605; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 8 - 644
Target Start/End: Original strand, 30634093 - 30634729
Alignment:
| Q |
8 |
atgtccaagaatatatgcctcaattcccaacaaatctgaatttccaaatgtgaaacaatataccaaatcattactatgattattattcccttttaatgcc |
107 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30634093 |
atgtccaataatatatgcctcaattcccaacaaatctgaatttccaaacgtgaaacaatataccaaatcattactatgattattattcccttttaatgcc |
30634192 |
T |
|
| Q |
108 |
acgtcagcaactttatataatagtctctcacctgaaacactcatctccgccccttcaaacacaagtgtcaccgccggtaacggcggaagaaccgaacccg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30634193 |
acgtcagcaactttatataatagtctctcacctgaaacactcatctccgccccttcaaacacaagtgtcaccgccggtaacgttggaagaaccgaacccg |
30634292 |
T |
|
| Q |
208 |
acccgatacggtaacacaaatccattgcaccttggaagacaaaattcgtgtcttccaaaagggtcaacactccttttgtttgttctacaaattcttgtct |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30634293 |
acccgatacggtaacacaaatccattgcaccttggaagacaaaatttgtgtcttccaaaagggtcaacactccttttgtttgttctacaaattcttgtct |
30634392 |
T |
|
| Q |
308 |
taaagcactgtaaaccggtcccaaaagaaacgtgaactgtgtacctgaatccaccattgtctgacccgcaccggtatgatccggtgcgaaaattgttttg |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30634393 |
taaagcactgtaaaccggtcccaaaagaaacgtgaactgtgtacccgaatccaccattgtctgacccgcaccggtatgatccggtgcgaaaattgttttg |
30634492 |
T |
|
| Q |
408 |
ggtaattggagcagcttcttcccgacccgtattccctcgagtcgtactgtgtatgcgactctatcgaaatagggtaatggggttgtgatttttaccattg |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30634493 |
ggtaattggagcagcttcttcccgacccgtattccctcgagtcgtactgtgtatgcgactcgatcgaaatagggtaatggggttgtgatttttaccattg |
30634592 |
T |
|
| Q |
508 |
gtgtgtatttcaatggcccgacccacttgacattcgcgtcgccgaagagtaaaacgccggtggagtctttgccggagatgcaataggagaatttgggtaa |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30634593 |
gtgtgtatttcaatggcccgacccacttgatattcgcgtcgccgaagagtaaaacgccggtggagtctttgccggagatgcaataggagaatttgggtaa |
30634692 |
T |
|
| Q |
608 |
tcccatttgggttacaaatgagagagacccacggttc |
644 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30634693 |
tcccatttgggttacaaatgagagagacccacggttc |
30634729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 34379931 - 34379991
Alignment:
| Q |
7 |
gatgtccaagaatatatgcctcaattcccaacaaatctgaatttccaaatgtgaaacaata |
67 |
Q |
| |
|
||||||||| |||| |||||||||| ||||||||||| || || ||||| ||||||||||| |
|
|
| T |
34379931 |
gatgtccaataataaatgcctcaatccccaacaaatcagagttcccaaaagtgaaacaata |
34379991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University