View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18089_low_20 (Length: 391)

Name: NF18089_low_20
Description: NF18089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18089_low_20
NF18089_low_20
[»] chr5 (6 HSPs)
chr5 (75-264)||(1504345-1504534)
chr5 (75-266)||(1491581-1491772)
chr5 (75-265)||(1481691-1481881)
chr5 (77-266)||(1477582-1477771)
chr5 (117-266)||(1485469-1485620)
chr5 (78-271)||(1496794-1496987)
[»] chr7 (5 HSPs)
chr7 (81-266)||(5314502-5314687)
chr7 (81-266)||(5309685-5309870)
chr7 (81-266)||(5290082-5290267)
chr7 (81-266)||(5302048-5302233)
chr7 (81-266)||(5283860-5284045)
[»] chr1 (3 HSPs)
chr1 (81-266)||(44128165-44128350)
chr1 (81-266)||(44132370-44132555)
chr1 (81-266)||(44140792-44140977)
[»] chr2 (1 HSPs)
chr2 (93-266)||(24165437-24165610)
[»] chr3 (2 HSPs)
chr3 (147-263)||(37863716-37863832)
chr3 (180-263)||(39029608-39029691)


Alignment Details
Target: chr5 (Bit Score: 142; Significance: 2e-74; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 75 - 264
Target Start/End: Original strand, 1504345 - 1504534
Alignment:
Q  75 accaagatggtgagtgtatctgaaattcgtaagtttcagagagcagaaggtcctgcaaccattttggccattggcactgcaaatccagcaaattgtgttc 174  Q
    ||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||     
T  1504345 accaagatggtgagtgtatctgaaattcgcaaggctcagagagcagaaggtcctgcaaccattttggccattggcactgcaaatccaccaaattgtgttg 1504444  T
Q  175 aacaaagtacatatcctgatttctactttaaaatcgcaaatagtgagcacaagactgaactcaaagagaaattccaacgcatgtgtaagt 264  Q
    ||||||| |||||||||||||||||||||| |||| |||| ||||| ||||| |||||||||||||||||||| ||||||||||||||||    
T  1504445 aacaaagcacatatcctgatttctactttagaatcacaaacagtgaacacaaaactgaactcaaagagaaatttcaacgcatgtgtaagt 1504534  T

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Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 75 - 266
Target Start/End: Original strand, 1491581 - 1491772
Alignment:
Q  75 accaagatggtgagtgtatctgaaattcgtaagtttcagagagcagaaggtcctgcaaccattttggccattggcactgcaaatccagcaaattgtgttc 174  Q
    ||||||||||||||||||||||||||||| |||  ||| || |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||     
T  1491581 accaagatggtgagtgtatctgaaattcgcaaggctcaaagggcagaaggtcctgcaaccatattggccattggcactgcaaatccagcaaactgtgttg 1491680  T
Q  175 aacaaagtacatatcctgatttctactttaaaatcgcaaatagtgagcacaagactgaactcaaagagaaattccaacgcatgtgtaagtat 266  Q
    ||||||| |||||||||||||| |||||||||||| ||||||| || ||||| ||||| |||||||| ||||| ||||||||||||||||||    
T  1491681 aacaaagcacatatcctgatttttactttaaaatcacaaatagcgaacacaaaactgagctcaaagaaaaatttcaacgcatgtgtaagtat 1491772  T

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Target: chr5; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 75 - 265
Target Start/End: Original strand, 1481691 - 1481881
Alignment:
Q  75 accaagatggtgagtgtatctgaaattcgtaagtttcagagagcagaaggtcctgcaaccattttggccattggcactgcaaatccagcaaattgtgttc 174  Q
    ||||||||||||||||||||||||||||| |||  ||| || |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||     
T  1481691 accaagatggtgagtgtatctgaaattcgcaaggctcaaagggcagaaggtcctgcaaccatattggccattggcactgcaaatccagcaaactgtgttg 1481790  T
Q  175 aacaaagtacatatcctgatttctactttaaaatcgcaaatagtgagcacaagactgaactcaaagagaaattccaacgcatgtgtaagta 265  Q
    ||||||| |||||||||||||| |||||||||||| |||| |||||||| ||    ||||||||||| ||||| |||||||||||||||||    
T  1481791 aacaaagcacatatcctgatttttactttaaaatcacaaacagtgagcataaagtcgaactcaaagaaaaatttcaacgcatgtgtaagta 1481881  T

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Target: chr5; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 77 - 266
Target Start/End: Original strand, 1477582 - 1477771
Alignment:
Q  77 caagatggtgagtgtatctgaaattcgtaagtttcagagagcagaaggtcctgcaaccattttggccattggcactgcaaatccagcaaattgtgttcaa 176  Q
    ||||||||||||||||||||||||||| |||  |||||| |||||||| ||||| |||||  ||||||||||||||||||||||||| || |||||| ||    
T  1477582 caagatggtgagtgtatctgaaattcgcaaggctcagagggcagaaggccctgccaccatcatggccattggcactgcaaatccagccaactgtgttgaa 1477681  T
Q  177 caaagtacatatcctgatttctactttaaaatcgcaaatagtgagcacaagactgaactcaaagagaaattccaacgcatgtgtaagtat 266  Q
    ||||| |||||||||||||| ||||| |||||| |||| |||||||||||   |||||| ||||| ||||| ||||||||||||||||||    
T  1477682 caaagcacatatcctgatttttacttcaaaatcacaaacagtgagcacaaagttgaacttaaagaaaaatttcaacgcatgtgtaagtat 1477771  T

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Target: chr5; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 117 - 266
Target Start/End: Original strand, 1485469 - 1485620
Alignment:
Q  117 gcagaaggtcctgcaaccattttggccattggcactgcaaatccagcaaattgtgttcaacaaagtacatatcctgatttc--tactttaaaatcgcaaa 214  Q
    |||||||| ||||||| ||| |||||||| || |||||||||||| ||||||||||| ||||||| |||||||||||||||  ||||| | |||||||||    
T  1485469 gcagaaggccctgcaatcatcttggccataggaactgcaaatccaccaaattgtgttgaacaaagcacatatcctgatttctatacttcagaatcgcaaa 1485568  T
Q  215 tagtgagcacaagactgaactcaaagagaaattccaacgcatgtgtaagtat 266  Q
    ||| |||||||||||  |||||| ||||||||| || ||||| |||||||||    
T  1485569 tagcgagcacaagacgcaactcagagagaaatttcagcgcatttgtaagtat 1485620  T

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Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 78 - 271
Target Start/End: Original strand, 1496794 - 1496987
Alignment:
Q  78 aagatggtgagtgtatctgaaattcgtaagtttcagagagcagaaggtcctgcaaccattttggccattggcactgcaaatccagcaaattgtgttcaac 177  Q
    |||||||| | ||||||||||||||| | |  ||| || |||||||| ||| |||| || || || |||||||||||||||||| |||||||| || |||    
T  1496794 aagatggtaactgtatctgaaattcgaagggctcaaagggcagaaggccctacaactatcttagctattggcactgcaaatccaacaaattgtattgaac 1496893  T
Q  178 aaagtacatatcctgatttctactttaaaatcgcaaatagtgagcacaagactgaactcaaagagaaattccaacgcatgtgtaagtataaatt 271  Q
    |||| |||||||||||| |||| || | | || |||| | |||||||||||||||| | ||| |||||||||| ||||| ||| |||| |||||    
T  1496894 aaagcacatatcctgatctctatttcagagtcacaaacaatgagcacaagactgaattaaaaaagaaattccagcgcatatgttagtaaaaatt 1496987  T

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Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 81 - 266
Target Start/End: Original strand, 5314502 - 5314687
Alignment:
Q  81 atggtgagtgtatctgaaattcgtaagtttcagagagcagaaggtcctgcaaccattttggccattggcactgcaaatccagcaaattgtgttcaacaaa 180  Q
    ||||||||||| |||||||||||||||  ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  5314502 atggtgagtgtgtctgaaattcgtaaggctcaaagagcagaaggtcctgcaaccattttggccattggtactgcaaatccagcaaattgtgttgaacaaa 5314601  T
Q  181 gtacatatcctgatttctactttaaaatcgcaaatagtgagcacaagactgaactcaaagagaaattccaacgcatgtgtaagtat 266  Q
    | |||||||||||||| |||||||||||  |||||||||| |||||   |||||||||||||||||| || |||||||||||||||    
T  5314602 gcacatatcctgatttttactttaaaattacaaatagtgaacacaaagttgaactcaaagagaaatttcagcgcatgtgtaagtat 5314687  T

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Target: chr7; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 81 - 266
Target Start/End: Original strand, 5309685 - 5309870
Alignment:
Q  81 atggtgagtgtatctgaaattcgtaagtttcagagagcagaaggtcctgcaaccattttggccattggcactgcaaatccagcaaattgtgttcaacaaa 180  Q
    ||||||||||| ||||||||||||||   ||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||    
T  5309685 atggtgagtgtgtctgaaattcgtaatgctcaaagagcagaaggtcctgcaactattttggccattggtactgcaaatccagcaaattgtgttgaacaaa 5309784  T
Q  181 gtacatatcctgatttctactttaaaatcgcaaatagtgagcacaagactgaactcaaagagaaattccaacgcatgtgtaagtat 266  Q
    | |||||||||||||| |||||||||||| |||||||||| ||||| |||||||| || |||||||| || |||||||||||||||    
T  5309785 gcacatatcctgatttttactttaaaatcacaaatagtgaacacaaaactgaacttaaggagaaatttcagcgcatgtgtaagtat 5309870  T

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Target: chr7; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 81 - 266
Target Start/End: Complemental strand, 5290267 - 5290082
Alignment:
Q  81 atggtgagtgtatctgaaattcgtaagtttcagagagcagaaggtcctgcaaccattttggccattggcactgcaaatccagcaaattgtgttcaacaaa 180  Q
    ||||||||||| ||||||||||||||   ||| || ||||||||||||||||| || || ||||||||||||||||||||||||||||||||| ||||||    
T  5290267 atggtgagtgtgtctgaaattcgtaaagctcaaagggcagaaggtcctgcaactatcttagccattggcactgcaaatccagcaaattgtgttgaacaaa 5290168  T
Q  181 gtacatatcctgatttctactttaaaatcgcaaatagtgagcacaagactgaactcaaagagaaattccaacgcatgtgtaagtat 266  Q
    | || ||||||||||| |||||||||||  |||||||||| ||||| |||||||||||||||||||| || |||||||||||||||    
T  5290167 gcacttatcctgatttttactttaaaattacaaatagtgaacacaaaactgaactcaaagagaaatttcagcgcatgtgtaagtat 5290082  T

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Target: chr7; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 81 - 266
Target Start/End: Original strand, 5302048 - 5302233
Alignment:
Q  81 atggtgagtgtatctgaaattcgtaagtttcagagagcagaaggtcctgcaaccattttggccattggcactgcaaatccagcaaattgtgttcaacaaa 180  Q
    ||||||||||| ||||||||||||||   ||| || ||||||||||||||||| || || ||||||||||||||||||||||||||||||||| ||||||    
T  5302048 atggtgagtgtgtctgaaattcgtaaagctcaaagggcagaaggtcctgcaactatcttagccattggcactgcaaatccagcaaattgtgttgaacaaa 5302147  T
Q  181 gtacatatcctgatttctactttaaaatcgcaaatagtgagcacaagactgaactcaaagagaaattccaacgcatgtgtaagtat 266  Q
    | || ||||||||||| |||||||||||  |||||||||| ||||| |||||||||||||||||||| || |||||||||||||||    
T  5302148 gcacttatcctgatttttactttaaaattacaaatagtgaacacaaaactgaactcaaagagaaatttcagcgcatgtgtaagtat 5302233  T

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Target: chr7; HSP #5
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 81 - 266
Target Start/End: Original strand, 5283860 - 5284045
Alignment:
Q  81 atggtgagtgtatctgaaattcgtaagtttcagagagcagaaggtcctgcaaccattttggccattggcactgcaaatccagcaaattgtgttcaacaaa 180  Q
    ||||||||||| ||||||||||||||   ||| || |||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||    
T  5283860 atggtgagtgtgtctgaaattcgtaaagctcaaagggcagaaggccctgcaaccatcttggccattgggactgcaaatccagcaaattgtgttgaacaaa 5283959  T
Q  181 gtacatatcctgatttctactttaaaatcgcaaatagtgagcacaagactgaactcaaagagaaattccaacgcatgtgtaagtat 266  Q
    | || ||||||||||| |||||||||||| |||| ||||| ||||| |||||||| ||||||||||| || |||||||||||||||    
T  5283960 gcacgtatcctgatttttactttaaaatcacaaacagtgaacacaaaactgaacttaaagagaaatttcagcgcatgtgtaagtat 5284045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 4e-60; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 81 - 266
Target Start/End: Original strand, 44128165 - 44128350
Alignment:
Q  81 atggtgagtgtatctgaaattcgtaagtttcagagagcagaaggtcctgcaaccattttggccattggcactgcaaatccagcaaattgtgttcaacaaa 180  Q
    ||||| ||||| ||||||||||| ||   ||| || |||||||| |||||||||||||| ||||||||||||||||| ||||| ||||||||| ||||||    
T  44128165 atggttagtgtgtctgaaattcgcaatgctcaaagggcagaaggccctgcaaccattttagccattggcactgcaaacccagccaattgtgttgaacaaa 44128264  T
Q  181 gtacatatcctgatttctactttaaaatcgcaaatagtgagcacaagactgaactcaaagagaaattccaacgcatgtgtaagtat 266  Q
    | |||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  44128265 gcacatatcctgatttctacttcaaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtat 44128350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 81 - 266
Target Start/End: Original strand, 44132370 - 44132555
Alignment:
Q  81 atggtgagtgtatctgaaattcgtaagtttcagagagcagaaggtcctgcaaccattttggccattggcactgcaaatccagcaaattgtgttcaacaaa 180  Q
    ||||| ||||| ||||||||||| ||   ||| || |||||||| |||||||||||||| ||||||||||||||||| ||||| ||||||||| ||||||    
T  44132370 atggttagtgtgtctgaaattcgcaatgctcaaagggcagaaggccctgcaaccattttagccattggcactgcaaacccagccaattgtgttgaacaaa 44132469  T
Q  181 gtacatatcctgatttctactttaaaatcgcaaatagtgagcacaagactgaactcaaagagaaattccaacgcatgtgtaagtat 266  Q
    | |||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  44132470 gcacatatcctgatttctacttcaaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtat 44132555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 81 - 266
Target Start/End: Original strand, 44140792 - 44140977
Alignment:
Q  81 atggtgagtgtatctgaaattcgtaagtttcagagagcagaaggtcctgcaaccattttggccattggcactgcaaatccagcaaattgtgttcaacaaa 180  Q
    ||||| ||||| ||||||||||| ||   ||| || |||||||| |||||||||||||| ||||||||||||||||| ||||| ||||||||| ||||||    
T  44140792 atggttagtgtgtctgaaattcgcaatgctcaaagggcagaaggccctgcaaccattttagccattggcactgcaaacccagccaattgtgttgaacaaa 44140891  T
Q  181 gtacatatcctgatttctactttaaaatcgcaaatagtgagcacaagactgaactcaaagagaaattccaacgcatgtgtaagtat 266  Q
    | |||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  44140892 gcacatatcctgatttctacttcaaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtat 44140977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 93 - 266
Target Start/End: Complemental strand, 24165610 - 24165437
Alignment:
Q  93 tctgaaattcgtaagtttcagagagcagaaggtcctgcaaccattttggccattggcactgcaaatccagcaaattgtgttcaacaaagtacatatcctg 192  Q
    |||||||||||||||  ||| || |||||||| |||||||| || |||||||||||||||||||||||| |||| |||||| ||||||| ||||||||||    
T  24165610 tctgaaattcgtaaggctcaaagggcagaaggccctgcaactatcttggccattggcactgcaaatccaccaaactgtgttgaacaaagcacatatcctg 24165511  T
Q  193 atttctactttaaaatcgcaaatagtgagcacaagactgaactcaaagagaaattccaacgcatgtgtaagtat 266  Q
    |||||||||||| | || |||| || ||||||||||   |||||||||| ||||| |||||||| |||||||||    
T  24165510 atttctactttagagtcacaaacagcgagcacaagatcaaactcaaagaaaaatttcaacgcatttgtaagtat 24165437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 147 - 263
Target Start/End: Complemental strand, 37863832 - 37863716
Alignment:
Q  147 ggcactgcaaatccagcaaattgtgttcaacaaagtacatatcctgatttctactttaaaatcgcaaatagtgagcacaagactgaactcaaagagaaat 246  Q
    ||||||||||||||   ||| |||||| | || |||||||||||||| || |||||    ||| |||| ||||| ||||| |||||||||| ||| ||||    
T  37863832 ggcactgcaaatcctcaaaactgtgttgatcagagtacatatcctgacttttacttccgtatcacaaacagtgaacacaaaactgaactcagagaaaaat 37863733  T
Q  247 tccaacgcatgtgtaag 263  Q
    |||| ||||||||||||    
T  37863732 tccagcgcatgtgtaag 37863716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 180 - 263
Target Start/End: Original strand, 39029608 - 39029691
Alignment:
Q  180 agtacatatcctgatttctactttaaaatcgcaaatagtgagcacaagactgaactcaaagagaaattccaacgcatgtgtaag 263  Q
    ||||||||||| || ||||||||    ||| ||||||||||||||||||| || || ||||| ||||| || ||||||||||||    
T  39029608 agtacatatccagacttctacttccgcatcacaaatagtgagcacaagacagagctgaaagaaaaatttcagcgcatgtgtaag 39029691  T

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