View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18089_low_22 (Length: 370)
Name: NF18089_low_22
Description: NF18089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18089_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 39457673 - 39457320
Alignment:
| Q |
1 |
gatatatatttacctagtcttaaaactctccatttgcataagattgattttaaatgttatgagcatctaaagaatcttctattaggatgtcctgttctag |
100 |
Q |
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| T |
39457673 |
gatatatatttacctagtcttaaaactctccatttgcataagattgattttaaatgttatgagcatctaaagaatcttctattaggatgtcctgttctag |
39457574 |
T |
|
| Q |
101 |
cggatttggaaacaacaaaaagttgctttgtggccaattttttaagccgtttatcagcggactttatagccttacccagtttgatcaaggctaggatttg |
200 |
Q |
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| T |
39457573 |
aggatttggaaacaacaaaaagttgctttgtggccaattttttaagccgtttatcagcggactttatagccttacccagtttgatcaaggctaggatttg |
39457474 |
T |
|
| Q |
201 |
tgaattacatattccatttagtatggtttgtaaggcagagatcctacgtgtagaaagagtggtatgaatatcatatggtcctaactcctaaataaataaa |
300 |
Q |
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| T |
39457473 |
tgaattacatattccatttagtatggtttgtaaggcagagatcctacgtgtagaaagagtggtatgaatatcatatggtcctaactcctaaataaataaa |
39457374 |
T |
|
| Q |
301 |
agtttgatgaaactatgattttcgtactatatatgcatatttaatgttgtgtct |
354 |
Q |
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| T |
39457373 |
agtttgatgaaactatgattttcgtactatatatgcatatttaatgttgtgtct |
39457320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 5 - 296
Target Start/End: Original strand, 39437602 - 39437891
Alignment:
| Q |
5 |
tatatttacctagtcttaaaactctccatttgcataagattgattttaaatgttatgagcatctaaagaatcttctattaggatgtcctgttctagcgga |
104 |
Q |
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||||||||||||||||| |||||||||||||||||||| |||||||| || | |||| || || | ||| ||| ||||| | |||||| |||||| ||| |
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| T |
39437602 |
tatatttacctagtcttcaaactctccatttgcataaggttgattttggatctcatgaacaactgatgaagcttttattaagctgtcctattctagagga |
39437701 |
T |
|
| Q |
105 |
tttggaaacaacaaaaagttgctttgtggccaattttttaagccgtttatcagcggactttatagccttacccagtttgatcaaggctaggatttgtgaa |
204 |
Q |
| |
|
|||||||||||| |||||||||||| || | | | | |||||| | | |||||||||| ||||||| | | | |||||||| |||||| ||||| |
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| T |
39437702 |
tttggaaacaactaaaagttgctttatgttcggtctgagtaaccgttttttggtggactttataaccttacctaatataatcaaggcaaggattagtgaa |
39437801 |
T |
|
| Q |
205 |
ttacatattccatttagtatggtttgtaaggcagagatcctacgtgtagaaagagtggtatgaatatcatatggtcctaactcctaaataaa |
296 |
Q |
| |
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|| | ||||| |||||||||||||||| ||||||| | ||||| |||||| ||||||||| ||||| |||| |||||||||||||||| |
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| T |
39437802 |
ttctttgttccacttagtatggtttgtaaagcagagaacttacgtatagaaaaagtggtatgtatatc--gtggtgctaactcctaaataaa |
39437891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 8 - 296
Target Start/End: Original strand, 39424582 - 39424862
Alignment:
| Q |
8 |
atttacctagtcttaaaactctccatttgcataagattgattttaaatgttatgagcatctaaagaatcttctattaggatgtcctgttctagcggattt |
107 |
Q |
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||||||||||||||||||||||||||||| ||| | |||||||| ||||| |||||||||||| ||| || ||||| | |||||| |||||| |||||| |
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| T |
39424582 |
atttacctagtcttaaaactctccatttgaatagggttgattttgaatgtcatgagcatctaatgaagattttattaagttgtcctattctagaggattt |
39424681 |
T |
|
| Q |
108 |
ggaaacaacaaaaagttgctttgtggccaattttttaagccgtttatcagcggactttatagccttacccagtttgatcaaggctaggatttgtgaatta |
207 |
Q |
| |
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||| ||| || ||||| |||| |||| ||||||||| || | || ||| |||||| |||| |||||||||||| |||||| |||||| |
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| T |
39424682 |
gga---aactaagctttgctgtgtgatggatttccaaagccgtttttcggatgaatttgcagcctttcccaatttgatcaaggcaaggattactgaattc |
39424778 |
T |
|
| Q |
208 |
catattccatttagtatggtttgtaaggcagagatcctacgtgtagaaagagtggtatgaatatcatatggtcctaactcctaaataaa |
296 |
Q |
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|||||||| |||||||||||||||||||| ||| |||| | | || ||||||||||||||| | ||||||||||||||||||| |
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| T |
39424779 |
tatattccacttagtatggtttgtaaggcaaagacgctacatattga---agtggtatgaatatc--gtcgtcctaactcctaaataaa |
39424862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 115
Target Start/End: Complemental strand, 39463188 - 39463078
Alignment:
| Q |
5 |
tatatttacctagtcttaaaactctccatttgcataagattgattttaaatgttatgagcatctaaagaatcttctattaggatgtcctgttctagcgga |
104 |
Q |
| |
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||||||||||||||| ||||| |||||||||| ||| | |||| ||| |||| |||||||||||| ||| ||| ||||| | |||||| || ||| ||| |
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| T |
39463188 |
tatatttacctagtcctaaaattctccatttgaatagggttgagtttggatgtcatgagcatctaatgaagcttttattaagctgtcctattttagagga |
39463089 |
T |
|
| Q |
105 |
tttggaaacaa |
115 |
Q |
| |
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||||||||||| |
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| T |
39463088 |
tttggaaacaa |
39463078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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