View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18089_low_24 (Length: 357)
Name: NF18089_low_24
Description: NF18089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18089_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 31499875 - 31500216
Alignment:
| Q |
1 |
tcagagaatatcatggaaaaatgttaaaatactacatggaattcttaatttggtaggttgtaatccttaacaggaacataacattgtaaaaatgtgccat |
100 |
Q |
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| T |
31499875 |
tcagagaatatcatggaaaaatgttaaaatactacatggaattcttaatttggtaggttgtaatccttaacaggaacataacattgtaaaaatgtgccat |
31499974 |
T |
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| Q |
101 |
gnnnnnnnnnnnnnnnntcgannnnnnnnctacattttttaaccaccgtctatatatgaagaagagcaacaattatctgtattgagtcatgatcatgact |
200 |
Q |
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| T |
31499975 |
gaaaataaaataaaaaatcgatttttgttctacattttttaaccaccgtctatatatgaagaagagcaagaattatctgtattgagtcatgatcatgact |
31500074 |
T |
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| Q |
201 |
ttgatttgaatgccataactcatttatttaaggtacgtagaacattgaattgaatgcaaagcttctattataaccgaccttcttgaactatcactatggc |
300 |
Q |
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| T |
31500075 |
ttgatttgaatgccataactcatttatttaaggtacgtagaacattgaattgaatgcaaatcttctattataaccgaccttcttgaactatcactatggc |
31500174 |
T |
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| Q |
301 |
cccatacatgtcataaggtctaaattcattagaagaagataa |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
31500175 |
cccatacatgtcataaggtctaaattcattagaagaagataa |
31500216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 294
Target Start/End: Original strand, 31507249 - 31507294
Alignment:
| Q |
249 |
attgaatgcaaagcttctattataaccgaccttcttgaactatcac |
294 |
Q |
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||||||||||||||||| ||||||||||||||| |||| |||||| |
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| T |
31507249 |
attgaatgcaaagcttccattataaccgaccttgatgaaatatcac |
31507294 |
T |
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