View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18089_low_29 (Length: 322)
Name: NF18089_low_29
Description: NF18089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18089_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 303
Target Start/End: Complemental strand, 2331528 - 2331242
Alignment:
| Q |
16 |
ataaaccaacttgaatatacaaacatacaatagcatactttttcacattgaatgtatcttggcttgcaagaaggccatgcatgttttattttatataaga |
115 |
Q |
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| T |
2331528 |
ataaaccaacttgaatatacaaacaaacaatagcatactttttcacattgaatgtatcttggcttgcaagaaggtcatgcatgttttattttatataaga |
2331429 |
T |
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| Q |
116 |
aacaagatatgtaagaatgaacaactatgatagtaaaggaatatgtatgcataagtgatcatttgatgaaacaaaatcacaccatcggacaaatctgcgg |
215 |
Q |
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| T |
2331428 |
aacaagatatgtaagaatgaacaactatgatagtaaaggaatatgtatgcataagtgatcatttgatgaaacaaaatcacaccatcggacaaatctgcgg |
2331329 |
T |
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| Q |
216 |
ataatcttcccctgctgtgatatatattacatcgtcaagcagagaatcgaagaatagtttaattagacagttgcagagacatttaact |
303 |
Q |
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| T |
2331328 |
ataatcttcccctgctgtgatatgtattacattgtcaaacagagaatc-aagaatagtttaattacacagttgcagagacatttaact |
2331242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 49 - 200
Target Start/End: Complemental strand, 2339388 - 2339236
Alignment:
| Q |
49 |
catactttttcacattgaatgtatcttggcttgcaagaaggccatgcatgttttattttatataagaaacaagatatgtaagaatgaacaactat--gat |
146 |
Q |
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| T |
2339388 |
catacttttttatattgaaagtatcttg-cttaccagaatgccaaacatgttttattttatacaagaaacgagatatataagaatgaacaaccatgagat |
2339290 |
T |
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| Q |
147 |
agtaaaggaatatgtatgcataagtgatcatttgatgaaacaaaatcacaccat |
200 |
Q |
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| T |
2339289 |
agtaaaggtatattaatgcataagggatcattggctgaagcaaaacctcaccat |
2339236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 90 - 159
Target Start/End: Complemental strand, 2304283 - 2304214
Alignment:
| Q |
90 |
ccatgcatgttttattttatataagaaacaagatatgtaagaatgaacaactatgatagtaaaggaatat |
159 |
Q |
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| T |
2304283 |
ccatgcatgttttattttatacaagaaacaagatatataagaatgaacaattatgatattaaaggcatat |
2304214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 2327743 - 2327672
Alignment:
| Q |
98 |
gttttattttatataagaaacaagatatgtaagaatgaacaactatgatagtaaaggaatatgtatgcataa |
169 |
Q |
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| T |
2327743 |
gttttattctataccagaaacaagatatataaaaatgaacaactatgatagtaaaagcatatgtatgcataa |
2327672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 60 - 132
Target Start/End: Complemental strand, 2321884 - 2321812
Alignment:
| Q |
60 |
acattgaatgtatcttggcttgcaagaaggccatgcatgttttattttatataagaaacaagatatgtaagaa |
132 |
Q |
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| T |
2321884 |
acattgaaagtatcttgacttacaagaatgacagacatgttttattttatacaagaaacaagatatataagaa |
2321812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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