View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18089_low_3 (Length: 644)
Name: NF18089_low_3
Description: NF18089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18089_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 27 - 549
Target Start/End: Complemental strand, 33055034 - 33054512
Alignment:
| Q |
27 |
tcaggtaacttacccttcacattagcattattagcagaaaaattctgaagagaagaagcatctttcaaagacacaggaatctcccatggctcaaaagggt |
126 |
Q |
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| T |
33055034 |
tcaggtaacttacccttcacattagcattattagcagaaaaattctgaagagaagaagcatctttcaaagacacaggaatctcccatggctcaaaagggt |
33054935 |
T |
|
| Q |
127 |
tatcatcaatctcaacagaaacaagctgagacataccagcnnnnnnntcactaggaaaagatgaaaaactgttaccactcgccatgaaaacttgaagaga |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33054934 |
tatcatcaatctcaacagaaacaagctgagacataccagcaaaaaaatcactaggaaacgatgaaaaactgttaccactcgccatgaaaacttgaagaga |
33054835 |
T |
|
| Q |
227 |
gtttaaaccgtttaagcttggaagtggacctgtgaagttgttgaattgaagctctaggtgttgtaagttggtaaggttttgaagggtttgaggaagtgtg |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33054834 |
gtttaaaccgtttaagcttggaagtggacctgtgaagttgttgaattgaagctctaggtgttgtaagttggtaaggttttgaagggtttgaggaagtgtg |
33054735 |
T |
|
| Q |
327 |
ccatggagattctggcgaccgatttggattctcgttacacggttgtcgtcagaacaagaaacgtgggtccatttacatggatccgggtcggaccaaccaa |
426 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33054734 |
ccatggagattctggcgaccgatttggattctcgttacacggttgtcgtcggaacaagaaacgtgggtccatttacatggatccgggtcggaccaaccaa |
33054635 |
T |
|
| Q |
427 |
gtgaaagaggcggtttaaggttgttttttagggtttgcatgatggaagcatcgttggtttgggagtgagtgaaagtgataatggaaaagaataaggtaaa |
526 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33054634 |
gcgaaagaggcggtttaaggttgttttttagggtttgcatgatggaagcatcgttggtttgggagtgagtgaaagtgataatggaaaagaataaggtaaa |
33054535 |
T |
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| Q |
527 |
gaaagttaaagggtgtacgatga |
549 |
Q |
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||||||||||||||||||||||| |
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| T |
33054534 |
gaaagttaaagggtgtacgatga |
33054512 |
T |
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