View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18089_low_31 (Length: 315)
Name: NF18089_low_31
Description: NF18089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18089_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 16 - 296
Target Start/End: Original strand, 45358729 - 45359006
Alignment:
| Q |
16 |
atgaaagtggaagggaaacctgggcacgttcaaatgggtatctagttttttatgcagaataattatacaaacatgaatcaaaaatgaaggagcataagat |
115 |
Q |
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| T |
45358729 |
atgaaagtggaagggaaacctgggcaagttcaagtgggtatctagttttttatgcagaat---tatacaaacatgaatcaaaaatgaaggagcataagat |
45358825 |
T |
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| Q |
116 |
atcgggaagtcttggaacatggtaaacagaaactgtttttatgtgcagcgtgaaagttaagcatatagtctcataaagatggtactgcaaaacaatatcg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
45358826 |
atcgggaagtcttggaacatggtaaacagaaactgtttttatgtgcagcgtgaaagttaagcatatagtctcataaagatggtactgcaaaacaatattg |
45358925 |
T |
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| Q |
216 |
gtatatgtttgggcacatggataagaaaaaacctatgctgagatagaggaagatcattctgtaattttcaaacgttgtacg |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45358926 |
gtatatgtttgggcacatggataagaaaaaacctatgctgagatagaggaagatcattctgtaattttcaaacgttgtacg |
45359006 |
T |
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