View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18089_low_32 (Length: 308)

Name: NF18089_low_32
Description: NF18089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18089_low_32
NF18089_low_32
[»] chr3 (22 HSPs)
chr3 (101-308)||(28001869-28002073)
chr3 (5-196)||(17746735-17746927)
chr3 (5-196)||(19048055-19048247)
chr3 (1-131)||(28053019-28053145)
chr3 (1-131)||(28063444-28063570)
chr3 (1-86)||(27914974-27915059)
chr3 (1-53)||(28183338-28183390)
chr3 (249-308)||(28147378-28147437)
chr3 (13-68)||(28001815-28001871)
chr3 (253-308)||(28053315-28053370)
chr3 (253-308)||(28063740-28063795)
chr3 (249-308)||(28081558-28081617)
chr3 (249-308)||(28183579-28183638)
chr3 (249-308)||(28131762-28131821)
chr3 (249-308)||(27918187-27918246)
chr3 (249-308)||(28482219-28482278)
chr3 (4-61)||(27457842-27457899)
chr3 (249-308)||(17746553-17746612)
chr3 (249-308)||(19047873-19047932)
chr3 (128-199)||(28183391-28183462)
chr3 (249-308)||(28511031-28511090)
chr3 (147-199)||(28147205-28147257)
[»] chr7 (1 HSPs)
chr7 (249-304)||(8693723-8693778)
[»] scaffold0257 (2 HSPs)
scaffold0257 (249-303)||(17164-17218)
scaffold0257 (124-196)||(16969-17041)


Alignment Details
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 101 - 308
Target Start/End: Original strand, 28001869 - 28002073
Alignment:
Q  101 atagtgagtttgaatcgacattctagtatattaaatatctccacaaccttttatcaactttgttgtatttacatgactttgttatttttattttatgcag 200  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||   ||||| |||||||||||||||||||||||||| |||||||||||||    
T  28001869 atagtgagtttgaatcgacactctagtatattaaatatctccacaaccttt---caactctgttgtatttacatgactttgttattcttattttatgcag 28001965  T
Q  201 gaatcgggtgggaatgtggaacattttcgcgctttagaaagtcttaaggaaataaatgaacaacaaatgaacttagctttggaagttattgatttggatg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||  ||    
T  28001966 gaatcgggtgggaatgtggaacattttcgcgctttagaaagtcttaaggaaataaatgaacaacaaatgaacttagctttgaaaattattgaattgcttg 28002065  T
Q  301 ttctgcct 308  Q
    ||||||||    
T  28002066 ttctgcct 28002073  T

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Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 5 - 196
Target Start/End: Complemental strand, 17746927 - 17746735
Alignment:
Q  5 taaacttcattacaattatgtttttcttgatatcggttgagcatatcaattggtctccattataaatttggaca-tggcgtgtctaagtagagagaaata 103  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||| ||||||||||| ||| |||||||||||||||||||      
T  17746927 taaacttcattacaattatgtttctcttgacatcggttgagcatatcaattagtctccattaaaaatttggacattggtgtgtctaagtagagagaaact 17746828  T
Q  104 gtgagtttgaatcgacattctagtatattaaatatctccacaaccttttat-caactttgttgtatttacatgactttgttatttttattttat 196  Q
    ||||||||||||| ||| ||| |||||| |||||||| |||||||||||||  | || | ||||| ||||| |||||||||||| |||||||||    
T  17746827 gtgagtttgaatcaacactctcgtatatcaaatatcttcacaaccttttatatatctctattgtacttaca-gactttgttattcttattttat 17746735  T

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Target: chr3; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 5 - 196
Target Start/End: Complemental strand, 19048247 - 19048055
Alignment:
Q  5 taaacttcattacaattatgtttttcttgatatcggttgagcatatcaattggtctccattataaatttggaca-tggcgtgtctaagtagagagaaata 103  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||| ||||||||||| ||| |||||||||||||||||||      
T  19048247 taaacttcattacaattatgtttctcttgacatcggttgagcatatcaattagtctccattaaaaatttggacattggtgtgtctaagtagagagaaact 19048148  T
Q  104 gtgagtttgaatcgacattctagtatattaaatatctccacaaccttttat-caactttgttgtatttacatgactttgttatttttattttat 196  Q
    ||||||||||||| ||| ||| |||||| |||||||| |||||||||||||  | || | ||||| ||||| |||||||||||| |||||||||    
T  19048147 gtgagtttgaatcaacactctcgtatatcaaatatcttcacaaccttttatatatctctattgtacttaca-gactttgttattcttattttat 19048055  T

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Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 28053019 - 28053145
Alignment:
Q  1 ttcctaaacttcattacaattatgtttttcttgatatcggttgagcatatcaattggtctccattataaatttggacatggcgtgtctaagtagagagaa 100  Q
    ||||||| ||||||||||||||||||| || ||||||||||||||||||||||  |||   ||||||||| |||||||||||||||||||||   |||||    
T  28053019 ttcctaagcttcattacaattatgtttctcgtgatatcggttgagcatatcaacgggt---cattataaa-ttggacatggcgtgtctaagtctggagaa 28053114  T
Q  101 atagtgagtttgaatcgacattctagtatat 131  Q
    || ||||||||||||| ||| ||||||||||    
T  28053115 attgtgagtttgaatcaacactctagtatat 28053145  T

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Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 28063444 - 28063570
Alignment:
Q  1 ttcctaaacttcattacaattatgtttttcttgatatcggttgagcatatcaattggtctccattataaatttggacatggcgtgtctaagtagagagaa 100  Q
    ||||||| ||||||||||||||||||| || ||||||||||||||||||||||  |||   ||||||||| |||||||||||||||||||||   |||||    
T  28063444 ttcctaagcttcattacaattatgtttctcgtgatatcggttgagcatatcaacgggt---cattataaa-ttggacatggcgtgtctaagtctggagaa 28063539  T
Q  101 atagtgagtttgaatcgacattctagtatat 131  Q
    || ||||||||||||| ||| ||||||||||    
T  28063540 attgtgagtttgaatcaacactctagtatat 28063570  T

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Target: chr3; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 27914974 - 27915059
Alignment:
Q  1 ttcctaaacttcattacaattatgtttttcttgatatcggttgagcatatcaattggtctccattataaatttggacatggcgtgt 86  Q
    |||||| |||||||||||||||||||| |||||| ||||||||| ||||| |||||||||||||||||||||||||||||| ||||    
T  27914974 ttcctagacttcattacaattatgtttctcttgaaatcggttgaacatattaattggtctccattataaatttggacatggtgtgt 27915059  T

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Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 28183338 - 28183390
Alignment:
Q  1 ttcctaaacttcattacaattatgtttttcttgatatcggttgagcatatcaa 53  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  28183338 ttcctaaacttcattacaattatgtttctcttgatatcggttgagcatatcaa 28183390  T

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Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 249 - 308
Target Start/End: Original strand, 28147378 - 28147437
Alignment:
Q  249 gaaataaatgaacaacaaatgaacttagctttggaagttattgatttggatgttctgcct 308  Q
    |||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||    
T  28147378 gaaataaatgaacagcaaatgaacttagctttggaagacattgatttggatgttctgcct 28147437  T

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Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 28001815 - 28001871
Alignment:
Q  13 attacaattatgtttttcttgatatcggttgagcatatcaa-ttggtctccattata 68  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  28001815 attacaattatgtttttcttgatatcagttgagcatatcaatttggtctccattata 28001871  T

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Target: chr3; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 253 - 308
Target Start/End: Original strand, 28053315 - 28053370
Alignment:
Q  253 taaatgaacaacaaatgaacttagctttggaagttattgatttggatgttctgcct 308  Q
    |||||||||| |||||||||||||||||| |||| |||||||||||||||||||||    
T  28053315 taaatgaacatcaaatgaacttagctttgaaagtcattgatttggatgttctgcct 28053370  T

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Target: chr3; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 253 - 308
Target Start/End: Original strand, 28063740 - 28063795
Alignment:
Q  253 taaatgaacaacaaatgaacttagctttggaagttattgatttggatgttctgcct 308  Q
    |||||||||| |||||||||||||||||| |||| |||||||||||||||||||||    
T  28063740 taaatgaacatcaaatgaacttagctttgaaagtcattgatttggatgttctgcct 28063795  T

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Target: chr3; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 249 - 308
Target Start/End: Original strand, 28081558 - 28081617
Alignment:
Q  249 gaaataaatgaacaacaaatgaacttagctttggaagttattgatttggatgttctgcct 308  Q
    ||||||||||||||  ||||||||||||||||| |||| |||||||||||||||||||||    
T  28081558 gaaataaatgaacagaaaatgaacttagctttgaaagtcattgatttggatgttctgcct 28081617  T

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Target: chr3; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 249 - 308
Target Start/End: Original strand, 28183579 - 28183638
Alignment:
Q  249 gaaataaatgaacaacaaatgaacttagctttggaagttattgatttggatgttctgcct 308  Q
    |||||||||||||  ||||||||||||||||||||||  |||||||||||||||||||||    
T  28183579 gaaataaatgaacggcaaatgaacttagctttggaagacattgatttggatgttctgcct 28183638  T

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Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 249 - 308
Target Start/End: Original strand, 28131762 - 28131821
Alignment:
Q  249 gaaataaatgaacaacaaatgaacttagctttggaagttattgatttggatgttctgcct 308  Q
    |||||||||||||| |||||||||||||||||| |||  ||||||||||||||| |||||    
T  28131762 gaaataaatgaacagcaaatgaacttagctttgaaagacattgatttggatgttttgcct 28131821  T

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Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 308
Target Start/End: Original strand, 27918187 - 27918246
Alignment:
Q  249 gaaataaatgaacaacaaatgaacttagctttggaagttattgatttggatgttctgcct 308  Q
    ||||||||||||||||||||||| |||| ||||||| | ||| ||||| |||||||||||    
T  27918187 gaaataaatgaacaacaaatgaaattaggtttggaattcatttatttgaatgttctgcct 27918246  T

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Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 308
Target Start/End: Complemental strand, 28482278 - 28482219
Alignment:
Q  249 gaaataaatgaacaacaaatgaacttagctttggaagttattgatttggatgttctgcct 308  Q
    |||||||||||||||||| ||| |||||||||| |||  ||||||||| |||||||||||    
T  28482278 gaaataaatgaacaacaactgagcttagctttgaaagaaattgatttgaatgttctgcct 28482219  T

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Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 27457899 - 27457842
Alignment:
Q  4 ctaaacttcattacaattatgtttttcttgatatcggttgagcatatcaattggtctc 61  Q
    |||||||||| ||||||||||||  |||||| |||||||||||||||  |||||||||    
T  27457899 ctaaacttcactacaattatgttactcttgacatcggttgagcatattcattggtctc 27457842  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 308
Target Start/End: Complemental strand, 17746612 - 17746553
Alignment:
Q  249 gaaataaatgaacaacaaatgaacttagctttggaagttattgatttggatgttctgcct 308  Q
    |||| ||||||||| ||||||||||||||||||||||  |||  ||||| ||||||||||    
T  17746612 gaaagaaatgaacagcaaatgaacttagctttggaagaaattattttgggtgttctgcct 17746553  T

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Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 308
Target Start/End: Complemental strand, 19047932 - 19047873
Alignment:
Q  249 gaaataaatgaacaacaaatgaacttagctttggaagttattgatttggatgttctgcct 308  Q
    |||| ||||||||| ||||||||||||||||||||||  |||  ||||| ||||||||||    
T  19047932 gaaagaaatgaacagcaaatgaacttagctttggaagaaattattttgggtgttctgcct 19047873  T

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Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 199
Target Start/End: Original strand, 28183391 - 28183462
Alignment:
Q  128 atattaaatatctccacaaccttttatcaactttgttgtatttacatgactttgttatttttattttatgca 199  Q
    |||| ||||||||||||| ||| |||||| || | ||||| |||||  ||||||||||| ||||||||||||    
T  28183391 atatcaaatatctccacagcctattatcatctctattgtacttacagaactttgttattcttattttatgca 28183462  T

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Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 308
Target Start/End: Complemental strand, 28511090 - 28511031
Alignment:
Q  249 gaaataaatgaacaacaaatgaacttagctttggaagttattgatttggatgttctgcct 308  Q
    |||||||||||||||||| ||| |||||||||| |||  ||||||||| ||||| |||||    
T  28511090 gaaataaatgaacaacaactgagcttagctttgaaagacattgatttgaatgttttgcct 28511031  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 28147205 - 28147257
Alignment:
Q  147 ccttttatcaactttgttgtatttacatgactttgttatttttattttatgca 199  Q
    |||||||||| || | ||||| ||| |||||||||||||| ||||||||||||    
T  28147205 ccttttatcatctctattgtacttatatgactttgttattcttattttatgca 28147257  T

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Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 249 - 304
Target Start/End: Complemental strand, 8693778 - 8693723
Alignment:
Q  249 gaaataaatgaacaacaaatgaacttagctttggaagttattgatttggatgttct 304  Q
    |||||||||||||| ||||||||||||||||||||  |||||||||||||||||||    
T  8693778 gaaataaatgaacagcaaatgaacttagctttggagtttattgatttggatgttct 8693723  T

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Target: scaffold0257 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 303
Target Start/End: Original strand, 17164 - 17218
Alignment:
Q  249 gaaataaatgaacaacaaatgaacttagctttggaagttattgatttggatgttc 303  Q
    |||||||||||||| |||||||||||||||||| ||   ||||||||||||||||    
T  17164 gaaataaatgaacagcaaatgaacttagctttgaaatacattgatttggatgttc 17218  T

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Target: scaffold0257; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 16969 - 17041
Alignment:
Q  124 tagtatattaaatatctccacaaccttttatcaactttgttgtatttacatgactttgttatttttattttat 196  Q
    |||||||| ||||||||||| | | |||||||| || | ||||| |||||  ||||||||||| |||||||||    
T  16969 tagtatataaaatatctccatagctttttatcatctctattgtaattacagcactttgttattcttattttat 17041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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