View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18089_low_34 (Length: 305)

Name: NF18089_low_34
Description: NF18089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18089_low_34
NF18089_low_34
[»] chr5 (4 HSPs)
chr5 (17-287)||(16194219-16194486)
chr5 (193-287)||(39946539-39946633)
chr5 (166-223)||(39945857-39945914)
chr5 (153-223)||(16195107-16195177)
[»] chr1 (1 HSPs)
chr1 (166-290)||(6942203-6942327)
[»] chr2 (2 HSPs)
chr2 (153-197)||(44986812-44986856)
chr2 (153-202)||(20606920-20606969)
[»] chr8 (1 HSPs)
chr8 (153-202)||(26847720-26847769)
[»] chr4 (4 HSPs)
chr4 (153-202)||(14527575-14527624)
chr4 (152-200)||(24666128-24666176)
chr4 (153-205)||(34450815-34450867)
chr4 (146-202)||(45393974-45394030)
[»] chr7 (1 HSPs)
chr7 (153-205)||(34808985-34809037)
[»] chr3 (1 HSPs)
chr3 (153-197)||(47571943-47571987)


Alignment Details
Target: chr5 (Bit Score: 150; Significance: 3e-79; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 17 - 287
Target Start/End: Original strand, 16194219 - 16194486
Alignment:
Q  17 actaaacacagtagaaaaactgataaacaaacacgttattacgttaatgcccgtcaatccgttgttagtagcttatttcataacataactctctacnnnn 116  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||        
T  16194219 actaaacacagcagaaaaactgataaacaaacacgttattacgttaatgcccgtcaatccgttgttactagcttatttcataacataattctctactttt 16194318  T
Q  117 nnnnnnnnnnnnngggtgatatggtctttt--ttatttggtgaattctagagtgaaggatcaattaagttcctcatcggtgaaccactttattccaccgt 214  Q
                 |||||||||||||||||  ||||||| || ||| |||||||| ||||||||||||| | ||||| ||||||||||||||||||||||    
T  16194319 gttttttc-----gggtgatatggtcttttttttatttgatggattatagagtgagggatcaattaagtccatcatcagtgaaccactttattccaccgt 16194413  T
Q  215 cagattaaatatgtctataggatttcattacttattaccacactggatctttgctccatgtcctttcttctct 287  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  16194414 cagattaaatatgtctctagaatttcattacttattaccacactggatctttgctccatgtcctcttttctct 16194486  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 193 - 287
Target Start/End: Complemental strand, 39946633 - 39946539
Alignment:
Q  193 gtgaaccactttattccaccgtcagattaaatatgtctataggatttcattacttattaccacactggatctttgctccatgtcctttcttctct 287  Q
    ||||||||||| ||| |||||| |||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  39946633 gtgaaccacttaatttcaccgttagattaaatacgtctacaagatttcattacttattaccacactggatctttgctccatgtcatgtcttctct 39946539  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 39945857 - 39945914
Alignment:
Q  166 gtgaaggatcaattaagttcctcatcggtgaaccactttattccaccgtcagattaaa 223  Q
    |||| ||| ||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  39945857 gtgagggaccaattaagtccctcatcggtgtaccactttattccaccgtcagattaaa 39945914  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 223
Target Start/End: Complemental strand, 16195177 - 16195107
Alignment:
Q  153 ggtgaattctagagtgaaggatcaattaagttcctcatcggtgaaccactttattccaccgtcagattaaa 223  Q
    |||| ||||||| |||| ||||||||||||| | |||  |||| ||||| |||||||||||||||||||||    
T  16195177 ggtggattctagggtgagggatcaattaagtccatcactggtgtaccacattattccaccgtcagattaaa 16195107  T

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Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 166 - 290
Target Start/End: Original strand, 6942203 - 6942327
Alignment:
Q  166 gtgaaggatcaattaagttcctcatcggtgaaccactttattccaccgtcagattaaatatgtctataggatttcattacttattaccacactggatctt 265  Q
    |||| ||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||| | ||||||| ||||||||||||||||| |||||    
T  6942203 gtgagggatcaattaagtccttcatcggtgaaccactttattccaccgttagattaaatatgtctacaagatttcaatacttattaccacactgaatctt 6942302  T
Q  266 tgctccatgtcctttcttctctgtg 290  Q
    ||||||||||||| | |||||||||    
T  6942303 tgctccatgtcctctattctctgtg 6942327  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 44986812 - 44986856
Alignment:
Q  153 ggtgaattctagagtgaaggatcaattaagttcctcatcggtgaa 197  Q
    |||||||||||| |||| ||||||||||||| |||||||||||||    
T  44986812 ggtgaattctagggtgagggatcaattaagtccctcatcggtgaa 44986856  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 20606969 - 20606920
Alignment:
Q  153 ggtgaattctagagtgaaggatcaattaagttcctcatcggtgaaccact 202  Q
    |||||||||||| |||| || |||||||||| ||||| ||||||||||||    
T  20606969 ggtgaattctagggtgagggttcaattaagtccctcaccggtgaaccact 20606920  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 26847769 - 26847720
Alignment:
Q  153 ggtgaattctagagtgaaggatcaattaagttcctcatcggtgaaccact 202  Q
    |||| |||||||  ||| ||||||||||||||||||| ||||||||||||    
T  26847769 ggtggattctaggatgagggatcaattaagttcctcaccggtgaaccact 26847720  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 14527624 - 14527575
Alignment:
Q  153 ggtgaattctagagtgaaggatcaattaagttcctcatcggtgaaccact 202  Q
    |||| ||||||| |||| ||||||||||||| ||||| ||||||||||||    
T  14527624 ggtggattctagggtgagggatcaattaagtccctcaccggtgaaccact 14527575  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 24666128 - 24666176
Alignment:
Q  152 tggtgaattctagagtgaaggatcaattaagttcctcatcggtgaacca 200  Q
    ||||| ||||||| |||| ||||||||||||| ||||| ||||||||||    
T  24666128 tggtggattctagggtgagggatcaattaagtccctcaccggtgaacca 24666176  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 34450815 - 34450867
Alignment:
Q  153 ggtgaattctagagtgaaggatcaattaagttcctcatcggtgaaccacttta 205  Q
    |||||||||||| |||| ||||||||||||| ||||| ||||| | |||||||    
T  34450815 ggtgaattctagggtgagggatcaattaagtccctcaccggtggagcacttta 34450867  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 202
Target Start/End: Original strand, 45393974 - 45394030
Alignment:
Q  146 tttatttggtgaattctagagtgaaggatcaattaagttcctcatcggtgaaccact 202  Q
    ||||| |||||||||||||||||| || ||||||||||  || | ||||||||||||    
T  45393974 tttatatggtgaattctagagtgagggttcaattaagtctcttaccggtgaaccact 45394030  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 34809037 - 34808985
Alignment:
Q  153 ggtgaattctagagtgaaggatcaattaagttcctcatcggtgaaccacttta 205  Q
    |||| |||||||||||| || |||||||||| | ||||||||| |||||||||    
T  34809037 ggtggattctagagtgagggttcaattaagtccttcatcggtgtaccacttta 34808985  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 47571987 - 47571943
Alignment:
Q  153 ggtgaattctagagtgaaggatcaattaagttcctcatcggtgaa 197  Q
    |||||||||||| |||| ||||||||||||| ||||| |||||||    
T  47571987 ggtgaattctagggtgagggatcaattaagtccctcaccggtgaa 47571943  T

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