View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18089_low_35 (Length: 304)

Name: NF18089_low_35

Description: NF18089

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF18089_low_35

[»] chr4 (2 HSPs)

Target: chr4 (Bit Score: 155; Significance: 3e-82; HSPs: 2)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 155; E-Value: 3e-82

Query Start/End: Original strand, 1 - 171

Target Start/End: Original strand, 37670537 - 37670707

Alignment:

Q	1	tagtaatttggagttggaacaaaatacaaatagagtttgatgagtcgaattcatatatacacttctaaacaatttgatatttattaaaactcatcaacca	100	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	37670537	tagtaatttggagatcgaagaaaatacaaatagagtttgatgagtcgaattcatatatacacttttaaacaatttgatatttattaaaactcatcaacca	37670636	T

Q	101	cttgattatctataccgtccaatttatacaattgaaacttgatcaaaattacacatcataatgcttgataa	171	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	37670637	cttgattatctataccgtccaatttatacaattgaaacttgatcaaaattacacatcataatgcttgataa	37670707	T

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Target: chr4; HSP #2

Raw Score: 39; E-Value: 0.0000000000004

Query Start/End: Original strand, 169 - 211

Target Start/End: Original strand, 37670722 - 37670764

Alignment:

Q	169	taaatgaagaatatgtagcacaaaataatgtatgtatgtgtta	211	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	37670722	taaatgaaaaatatgtagcacaaaataatgtatgtatgtgtta	37670764	T

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