View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18089_low_36 (Length: 300)
Name: NF18089_low_36
Description: NF18089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18089_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 4e-78; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 49 - 285
Target Start/End: Complemental strand, 25565647 - 25565414
Alignment:
| Q |
49 |
aatttaaatttggcaatagattccaaaatgataatattcatcgaataagcaaaattacaatttgatactttatagaacaattcattacatgttcacttgt |
148 |
Q |
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| T |
25565647 |
aatttaaatttggcaataaattccaaaatgataatattcattgaataagcaaaattacaatttgatactttatagaacagttcattacatgttcacttgc |
25565548 |
T |
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| Q |
149 |
aaataatataattttctaaccaacaagatgaattaatcagcatctattggagattnnnnnnnnnnnnnnnntgaagaattaattatgtaacacaatttga |
248 |
Q |
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| T |
25565547 |
aaataatatatttttctaaccaacaagatgaattaatcagcatctattggagatt--aaaaataaaaagaatgaagaattaattatgtaacacaa-ttga |
25565451 |
T |
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| Q |
249 |
actcatgagtcgttggaatctgatatcctagaaatct |
285 |
Q |
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| T |
25565450 |
agtcatgagtcgttggaatctgatatccgagaaatct |
25565414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 70 - 283
Target Start/End: Complemental strand, 25588030 - 25587810
Alignment:
| Q |
70 |
tccaaaatgataatatt----catcgaataagcaaaattacaatttgatactttatagaacaattcattacatgttcacttgtaaataatataattttct |
165 |
Q |
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| T |
25588030 |
tccaaaatgataatattaattcattggataaacaaacttacaatttgatactttatagaacagttcattacatgttcacttgcaaataatataattttct |
25587931 |
T |
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| Q |
166 |
aaccaacaagatgaattaatcagcatctattggagatt---nnnnnnnnnnnnnnnntgaagaattaattatgtaacacaatttgaactcatgagtcgtt |
262 |
Q |
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| T |
25587930 |
aaccaacaagatgaattaatcagcatctattggagattaaaaaaaaaaaaaaagaaatgaagaattaattatgtaacacaatttgaagtcatgagtcgtt |
25587831 |
T |
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| Q |
263 |
ggaatctgatatcctagaaat |
283 |
Q |
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| T |
25587830 |
ggaatctgatatccgagaaat |
25587810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 25565712 - 25565674
Alignment:
| Q |
8 |
gagcagagacgatattaacatgcatgaagattccacata |
46 |
Q |
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| T |
25565712 |
gagcagggacgatattaacatgcatgaagattccacata |
25565674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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