View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18089_low_37 (Length: 298)

Name: NF18089_low_37
Description: NF18089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18089_low_37
NF18089_low_37
[»] chr4 (17 HSPs)
chr4 (17-145)||(11140538-11140667)
chr4 (178-242)||(11140469-11140534)
chr4 (178-254)||(31307130-31307207)
chr4 (117-254)||(38766089-38766230)
chr4 (178-254)||(14854605-14854682)
chr4 (178-246)||(45994530-45994599)
chr4 (126-247)||(13686608-13686733)
chr4 (178-245)||(17135106-17135173)
chr4 (178-263)||(38844232-38844318)
chr4 (180-254)||(35972343-35972418)
chr4 (178-246)||(46016154-46016226)
chr4 (178-245)||(22189452-22189520)
chr4 (178-245)||(35334162-35334230)
chr4 (178-245)||(51853707-51853774)
chr4 (178-249)||(46250619-46250694)
chr4 (40-112)||(29938864-29938936)
chr4 (178-249)||(56447186-56447258)
[»] chr8 (10 HSPs)
chr8 (127-245)||(36994511-36994632)
chr8 (178-275)||(2743912-2744010)
chr8 (178-254)||(13468809-13468886)
chr8 (178-254)||(15682929-15683006)
chr8 (178-245)||(19715790-19715858)
chr8 (178-254)||(4125088-4125165)
chr8 (178-254)||(30936004-30936081)
chr8 (178-245)||(12958149-12958217)
chr8 (157-247)||(16701420-16701513)
chr8 (178-245)||(30056065-30056133)
[»] chr6 (6 HSPs)
chr6 (117-246)||(12411156-12411289)
chr6 (126-254)||(21028989-21029124)
chr6 (178-245)||(21910214-21910282)
chr6 (180-246)||(28099251-28099318)
chr6 (117-219)||(12836897-12837002)
chr6 (178-247)||(31107557-31107627)
[»] chr7 (10 HSPs)
chr7 (178-249)||(8839345-8839417)
chr7 (117-254)||(29059805-29059946)
chr7 (117-254)||(31492103-31492244)
chr7 (178-254)||(13254165-13254242)
chr7 (178-254)||(21747104-21747180)
chr7 (178-254)||(19477313-19477390)
chr7 (178-245)||(27484113-27484181)
chr7 (178-254)||(40099336-40099413)
chr7 (178-254)||(28537390-28537467)
chr7 (194-246)||(35707855-35707907)
[»] scaffold0182 (1 HSPs)
scaffold0182 (178-249)||(26336-26408)
[»] chr5 (5 HSPs)
chr5 (178-254)||(10591927-10592004)
chr5 (180-242)||(2798381-2798444)
chr5 (178-240)||(18909365-18909428)
chr5 (178-275)||(30785050-30785148)
chr5 (203-254)||(28023532-28023584)
[»] chr2 (12 HSPs)
chr2 (178-254)||(44732637-44732714)
chr2 (178-254)||(37568791-37568868)
chr2 (191-254)||(5394397-5394461)
chr2 (178-254)||(12133294-12133371)
chr2 (194-254)||(18105442-18105503)
chr2 (178-254)||(42745180-42745257)
chr2 (180-249)||(31579295-31579365)
chr2 (178-244)||(9438200-9438267)
chr2 (189-254)||(28365949-28366015)
chr2 (189-245)||(993763-993820)
chr2 (167-244)||(42905678-42905755)
chr2 (194-245)||(17627568-17627620)
[»] chr3 (7 HSPs)
chr3 (178-249)||(38088640-38088712)
chr3 (181-254)||(48204378-48204452)
chr3 (178-254)||(30996029-30996106)
chr3 (178-249)||(25224704-25224776)
chr3 (178-247)||(22755651-22755721)
chr3 (178-238)||(27763737-27763798)
chr3 (178-249)||(48211024-48211096)
[»] chr1 (9 HSPs)
chr1 (178-245)||(29124754-29124822)
chr1 (178-249)||(45806241-45806313)
chr1 (178-246)||(22022128-22022197)
chr1 (178-218)||(9781053-9781093)
chr1 (40-112)||(52017764-52017836)
chr1 (213-254)||(14500358-14500399)
chr1 (178-254)||(16756082-16756159)
chr1 (178-242)||(32883634-32883699)
chr1 (178-249)||(17600562-17600634)
[»] scaffold0009 (1 HSPs)
scaffold0009 (180-266)||(32330-32417)
[»] scaffold0020 (1 HSPs)
scaffold0020 (189-249)||(167860-167919)


Alignment Details
Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 11140667 - 11140538
Alignment:
Q  17 cacagacgcacatggggacgggaaatgtggtgatctgggttcgaattcgaggttccacataaaacgtcctcaaagtcaaaccactaggttgtaacagtaa 116  Q
    |||||||||||| ||||| |||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||     
T  11140667 cacagacgcacacggggaggggaaatgtggtgatctgggttagaattcggggttccacataaaacatcctcaaagtcaaaccactaggttgtaacagtac 11140568  T
Q  117 gcgcaact-gggagactaatccctcaatcc 145  Q
     |||||||  ||||||||||| ||| ||||    
T  11140567 acgcaactacggagactaatctctcgatcc 11140538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 11140534 - 11140469
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcg-aaccaggaccgtggttaagctagaaga 242  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||    
T  11140534 agagttttaaagctgctgcatgcccaaggctggattcgaaaccaggaccttggttaagctagaaga 11140469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 178 - 254
Target Start/End: Original strand, 31307130 - 31307207
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaa-ccaggaccgtggttaagctagaagagacccgtaccat 254  Q
    ||||||||||  |||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||    
T  31307130 agagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagacccgttccat 31307207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 117 - 254
Target Start/End: Complemental strand, 38766230 - 38766089
Alignment:
Q  117 gcgcaactg-ggagactaatccctcaatccttgtatgacctaaatgggctacaaactctt--ttagagttttaaagctgctgcatggccaaggctggatt 213  Q
    ||||||||| ||||||||||||||| | | ||||  |||| ||||||||  || |||||   | |||||||||| ||||||||||| |||||||||||||    
T  38766230 gcgcaactgcggagactaatccctcgagcattgtgagacccaaatgggcggcagactctccctaagagttttaacgctgctgcatgcccaaggctggatt 38766131  T
Q  214 cgaa-ccaggaccgtggttaagctagaagagacccgtaccat 254  Q
    | || |||||||| ||||||||||||||||||| ||| ||||    
T  38766130 caaacccaggaccttggttaagctagaagagactcgttccat 38766089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 14854682 - 14854605
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaa-ccaggaccgtggttaagctagaagagacccgtaccat 254  Q
    |||||||||| | ||||||||| ||||||||||||||||| |||| ||| |||||||||||||||||| |||| ||||    
T  14854682 agagttttaacgatgctgcatgcccaaggctggattcgaacccagaaccttggttaagctagaagagaaccgttccat 14854605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 178 - 246
Target Start/End: Complemental strand, 45994599 - 45994530
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaa-ccaggaccgtggttaagctagaagagacc 246  Q
    |||||||||| | || |||||| ||||||||||||||||| |||||||| ||||||||||||||||||||    
T  45994599 agagttttaacgttgttgcatgcccaaggctggattcgaatccaggaccttggttaagctagaagagacc 45994530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 247
Target Start/End: Complemental strand, 13686733 - 13686608
Alignment:
Q  126 ggagactaatccctcaatccttgtatgacctaaatgggctacaaactct---tttagagttttaaagctgctgcatggccaaggctggattcgaa-ccag 221  Q
    ||||||||||| ||| | ||||||  |||| |||||| |  ||||||||   || |||||||||| ||||||||| | |||||| |||||||||| ||||    
T  13686733 ggagactaatctctcgagccttgtgagacccaaatggacggcaaactctcccttaagagttttaacgctgctgcacgcccaaggatggattcgaacccag 13686634  T
Q  222 gaccgtggttaagctagaagagaccc 247  Q
    |||| ||||||||| |||||||||||    
T  13686633 gaccttggttaagcaagaagagaccc 13686608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 245
Target Start/End: Complemental strand, 17135173 - 17135106
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaaccaggaccgtggttaagctagaagagac 245  Q
    |||||||||| |||||||||||  ||||||||||||||||| |||||  || ||||||||||||||||    
T  17135173 agagttttaacgctgctgcatgcacaaggctggattcgaactaggactttgattaagctagaagagac 17135106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 263
Target Start/End: Original strand, 38844232 - 38844318
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaac-caggaccgtggttaagctagaagagacccgtaccattttatttaa 263  Q
    |||||||||| |||| |||||| |||| ||||||||||||| || |||| ||||||||||||||||||| ||| |||| | ||||||    
T  38844232 agagttttaacgctgttgcatgcccaaagctggattcgaactcatgaccttggttaagctagaagagactcgttccatctcatttaa 38844318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 254
Target Start/End: Complemental strand, 35972418 - 35972343
Alignment:
Q  180 agttttaaagctgctgcatggccaaggctggattcgaa-ccaggaccgtggttaagctagaagagacccgtaccat 254  Q
    |||||||| ||||||| ||| ||| ||||||||||||| ||| |||| ||||||||||||||||| ||||| ||||    
T  35972418 agttttaacgctgctgtatgcccatggctggattcgaacccaagaccttggttaagctagaagaggcccgttccat 35972343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 246
Target Start/End: Complemental strand, 46016226 - 46016154
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaa-ccaggac---cgtggttaagctagaagagacc 246  Q
    ||||||||||  |||||||||| ||||||||||||||||| |||||||   | ||||||||||||||||||||    
T  46016226 agagttttaacactgctgcatgcccaaggctggattcgaacccaggacctacttggttaagctagaagagacc 46016154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 245
Target Start/End: Original strand, 22189452 - 22189520
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaac-caggaccgtggttaagctagaagagac 245  Q
    |||||||||| | |||||||||  ||||| ||||||||||| | ||||| |||||||||||||||||||    
T  22189452 agagttttaatgttgctgcatgcacaaggttggattcgaactctggaccttggttaagctagaagagac 22189520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 245
Target Start/End: Original strand, 35334162 - 35334230
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaaccagga-ccgtggttaagctagaagagac 245  Q
    ||||||||||  |||||||||| ||||||||| || ||||||| || || |||||||||||||||||||    
T  35334162 agagttttaactctgctgcatgcccaaggctgaatacgaaccaagaaccttggttaagctagaagagac 35334230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 178 - 245
Target Start/End: Complemental strand, 51853774 - 51853707
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaaccaggaccgtggttaagctagaagagac 245  Q
    |||||||||| |  |||||||| ||||||||| ||||||||||| ||  |||||||| ||||||||||    
T  51853774 agagttttaaggaagctgcatgcccaaggctgaattcgaaccagaactttggttaagttagaagagac 51853707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 249
Target Start/End: Original strand, 46250619 - 46250694
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaacc-aggac---cgtggttaagctagaagagacccgt 249  Q
    ||||||||||  |||||||||| ||||| ||||||||||||| |||||   | ||||||||||||||||| |||||    
T  46250619 agagttttaacactgctgcatgcccaagactggattcgaacctaggacctacttggttaagctagaagagccccgt 46250694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 112
Target Start/End: Complemental strand, 29938936 - 29938864
Alignment:
Q  40 aatgtggtgatctgggttcgaattcgaggttccacataaaacgtcctcaaagtcaaaccactaggttgtaaca 112  Q
    |||||||||| ||||||| |||  |||  || ||||||||| ||||||| |  ||||||||||||||||||||    
T  29938936 aatgtggtgacctgggtttgaacccgaaatttcacataaaatgtcctcacaaccaaaccactaggttgtaaca 29938864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 249
Target Start/End: Original strand, 56447186 - 56447258
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaacc-aggaccgtggttaagctagaagagacccgt 249  Q
    ||||||||||  |||||||||| |||  |||||||||||||| |||||  ||||||| |||||||| ||||||    
T  56447186 agagttttaacactgctgcatgcccatagctggattcgaacctaggactttggttaaactagaagaaacccgt 56447258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 127 - 245
Target Start/End: Original strand, 36994511 - 36994632
Alignment:
Q  127 gagactaatccctcaatccttgtatgacctaaatgggctacaaactct--tttagagttttaaagctgctgcatggccaaggctggattcgaa-ccagga 223  Q
    |||||||||||||| | ||||||  |||| ||||||||  ||||||||  || |||||||||| ||||||||||| ||||||||||||||||| ||||||    
T  36994511 gagactaatccctcgagccttgtgggacccaaatgggcagcaaactctccttaagagttttaacgctgctgcatgtccaaggctggattcgaacccagga 36994610  T
Q  224 ccgtggttaagctagaagagac 245  Q
    || ||||||| |||||||||||    
T  36994611 ccttggttaaactagaagagac 36994632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 178 - 275
Target Start/End: Complemental strand, 2744010 - 2743912
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaacc-aggaccgtggttaagctagaagagacccgtaccattttatttaaatggtattgggt 275  Q
    ||||||||||  |||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||| |||| | || |||||| | ||||||    
T  2744010 agagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagacccgttccatctcatctaaatgctcttgggt 2743912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 178 - 254
Target Start/End: Original strand, 13468809 - 13468886
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaa-ccaggaccgtggttaagctagaagagacccgtaccat 254  Q
    |||||||||| |||||| |||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||    
T  13468809 agagttttaacgctgctacatgcccaaggctggattcgaacccaggaccttggttaagctagaagagacccgttccat 13468886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 15683006 - 15682929
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaac-caggaccgtggttaagctagaagagacccgtaccat 254  Q
    |||||||||| ||||||||||| |||||||||||||||||| ||||||| || |||||||||||||||| ||| ||||    
T  15683006 agagttttaacgctgctgcatgcccaaggctggattcgaactcaggaccttgattaagctagaagagactcgttccat 15682929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 245
Target Start/End: Original strand, 19715790 - 19715858
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaa-ccaggaccgtggttaagctagaagagac 245  Q
    |||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||||||| ||||    
T  19715790 agagttttaacgctgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaaaagac 19715858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 254
Target Start/End: Original strand, 4125088 - 4125165
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaacc-aggaccgtggttaagctagaagagacccgtaccat 254  Q
    ||||||||||   ||||||||| |||||||| |||||||||| |||||  ||||||||||||||||||||||| ||||    
T  4125088 agagttttaacagtgctgcatgcccaaggcttgattcgaacccaggacattggttaagctagaagagacccgttccat 4125165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 30936081 - 30936004
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaac-caggaccgtggttaagctagaagagacccgtaccat 254  Q
    |||||||||| | |||||||||   |||||||||||||||| ||||||| |||||||| |||||||||||||| ||||    
T  30936081 agagttttaacgttgctgcatgcttaaggctggattcgaactcaggaccttggttaagttagaagagacccgttccat 30936004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 178 - 245
Target Start/End: Original strand, 12958149 - 12958217
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaa-ccaggaccgtggttaagctagaagagac 245  Q
    |||||||||| ||||||||||| |||| ||||||||| || ||| |||| |||||||||||||||||||    
T  12958149 agagttttaacgctgctgcatgcccaatgctggattcaaacccatgaccttggttaagctagaagagac 12958217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 247
Target Start/End: Original strand, 16701420 - 16701513
Alignment:
Q  157 aaatgggctacaaactctt--ttagagttttaaagctgctgcatggccaaggctggattcgaa-ccaggaccgtggttaagctagaagagaccc 247  Q
    ||||||||||||||||||   | |||| ||||||||| ||| ||| ||||||||||||||||| |||| ||| | |||||| ||||||||||||    
T  16701420 aaatgggctacaaactctccctaagaggtttaaagctactgtatgtccaaggctggattcgaacccagaaccttagttaagatagaagagaccc 16701513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 245
Target Start/End: Original strand, 30056065 - 30056133
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaa-ccaggaccgtggttaagctagaagagac 245  Q
    |||||||||| ||||||||||| | ||||||||||| ||| ||| |||| | |||||||||||||||||    
T  30056065 agagttttaatgctgctgcatgcctaaggctggatttgaacccatgaccttcgttaagctagaagagac 30056133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 117 - 246
Target Start/End: Complemental strand, 12411289 - 12411156
Alignment:
Q  117 gcgcaactg-ggagactaatccctcaatccttgtatgacctaaatgggctacaaactctt--ttagagttttaaagctgctgcatggccaaggctggatt 213  Q
    ||||||||| ||||||||||||||||| | ||||  ||| |||||||||  || ||||||  | |||||||||| ||||||||||| |||||||||||||    
T  12411289 gcgcaactgtggagactaatccctcaagcattgtgggacttaaatgggcggcagactcttcctaagagttttaacgctgctgcatgcccaaggctggatt 12411190  T
Q  214 cgaac-caggaccgtggttaagctagaagagacc 246  Q
    ||||| ||||||| |||||||| |||||||||||    
T  12411189 cgaactcaggaccttggttaagttagaagagacc 12411156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 126 - 254
Target Start/End: Original strand, 21028989 - 21029124
Alignment:
Q  126 ggagactaatccctcaatccttgtatgacctaaatgggctacaaactcttttagagttttaaagctgctgcat------ggccaaggctggattcgaacc 219  Q
    ||||||||||||||  | ||||||   ||| ||||||||  |||||||| | |||||||||| ||||||||||      | |||||||||||||||||||    
T  21028989 ggagactaatcccttgagccttgtggcacccaaatgggcggcaaactctctaagagttttaacgctgctgcatctgcatgcccaaggctggattcgaacc 21029088  T
Q  220 -aggaccgtggttaagctagaagagacccgtaccat 254  Q
     | |||| ||||||||||||||||||||||| ||||    
T  21029089 caagaccttggttaagctagaagagacccgtgccat 21029124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 178 - 245
Target Start/End: Complemental strand, 21910282 - 21910214
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaa-ccaggaccgtggttaagctagaagagac 245  Q
    |||||||||| | || |||||| ||||||||||||||||| |||||| | |||||||||||||||||||    
T  21910282 agagttttaacgatgttgcatgcccaaggctggattcgaacccaggatcttggttaagctagaagagac 21910214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 246
Target Start/End: Complemental strand, 28099318 - 28099251
Alignment:
Q  180 agttttaaagctgctgcatggccaaggctggattcgaa-ccaggaccgtggttaagctagaagagacc 246  Q
    ||||||||  |||||||||| ||||||||||||||||| |||||||| | |||||| |||||||||||    
T  28099318 agttttaacactgctgcatgcccaaggctggattcgaacccaggaccttagttaaggtagaagagacc 28099251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 219
Target Start/End: Original strand, 12836897 - 12837002
Alignment:
Q  117 gcgcaactggg-agactaatccctcaatccttgtatgacctaaatgggctacaaactctt--ttagagttttaaagctgctgcatggccaaggctggatt 213  Q
    ||||||||||| ||||||||||||||| | ||||  |||| ||||||||  | | ||||   | |||||||||| ||||||||||| | |||||||||||    
T  12836897 gcgcaactggggagactaatccctcaagcattgtgggacccaaatgggcggcgagctctccctaagagttttaacgctgctgcatgcctaaggctggatt 12836996  T
Q  214 cgaacc 219  Q
    ||||||    
T  12836997 cgaacc 12837002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 31107557 - 31107627
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaac-caggaccgtggttaagctagaagagaccc 247  Q
    |||||||||| |||| |||||| |||| ||||||||||||| ||| ||| | |||||| ||||||||||||    
T  31107557 agagttttaacgctgttgcatgtccaatgctggattcgaactcagaaccttagttaagttagaagagaccc 31107627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 178 - 249
Target Start/End: Original strand, 8839345 - 8839417
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaa-ccaggaccgtggttaagctagaagagacccgt 249  Q
    |||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  8839345 agagttttaacgctgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagacccgt 8839417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 117 - 254
Target Start/End: Complemental strand, 29059946 - 29059805
Alignment:
Q  117 gcgcaactg-ggagactaatccctcaatccttgtatgacctaaatgggctacaaactctt--ttagagttttaaagctgctgcatggccaaggctggatt 213  Q
    ||||||||| ||||||||||||||||| | ||||  |||| ||||||||  ||  ||||   | ||||||||||  |||||||||| |||||||||||||    
T  29059946 gcgcaactgcggagactaatccctcaagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggatt 29059847  T
Q  214 cgaa-ccaggaccgtggttaagctagaagagacccgtaccat 254  Q
    |||| |||||||| ||||||||||||||||||||||| ||||    
T  29059846 cgaacccaggaccttggttaagctagaagagacccgttccat 29059805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 117 - 254
Target Start/End: Complemental strand, 31492244 - 31492103
Alignment:
Q  117 gcgcaactg-ggagactaatccctcaatccttgtatgacctaaatgggctacaaactctt--ttagagttttaaagctgctgcatggccaaggctggatt 213  Q
    ||||||||| ||||||||||||||| | | ||||  |||||||||||||  ||  ||||   | ||||||||||  |||||||||| |||||||||||||    
T  31492244 gcgcaactgcggagactaatccctcgagcattgtgggacctaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggatt 31492145  T
Q  214 cgaa-ccaggaccgtggttaagctagaagagacccgtaccat 254  Q
    |||| |||||||| ||||||||||||||||||||||| ||||    
T  31492144 cgaacccaggaccttggttaagctagaagagacccgttccat 31492103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 178 - 254
Target Start/End: Original strand, 13254165 - 13254242
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaac-caggaccgtggttaagctagaagagacccgtaccat 254  Q
    ||||||| || ||||||||||| | |||||||||||||||| ||||||| ||||||||||||||||||||||| ||||    
T  13254165 agagtttcaacgctgctgcatgcctaaggctggattcgaactcaggaccttggttaagctagaagagacccgttccat 13254242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 178 - 254
Target Start/End: Original strand, 21747104 - 21747180
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaaccaggaccgtggttaagctagaagagacccgtaccat 254  Q
    |||||||||| ||||| ||||| | || ||||||||||| |||||||| |||||||| |||||||||||||| ||||    
T  21747104 agagttttaacgctgcagcatgcctaaagctggattcgacccaggaccttggttaagttagaagagacccgttccat 21747180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 254
Target Start/End: Original strand, 19477313 - 19477390
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaacc-aggaccgtggttaagctagaagagacccgtaccat 254  Q
    ||||||||||  ||| |||||| |||||||||||||| |||| || ||| ||||||||||||||||||||||| ||||    
T  19477313 agagttttaacactgttgcatgcccaaggctggattcaaacccagaaccttggttaagctagaagagacccgttccat 19477390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 178 - 245
Target Start/End: Original strand, 27484113 - 27484181
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaac-caggaccgtggttaagctagaagagac 245  Q
    |||||||||| ||||||||||| ||| |||||||||  ||| ||||||| |||||||||||||||||||    
T  27484113 agagttttaacgctgctgcatgcccatggctggatttaaactcaggaccttggttaagctagaagagac 27484181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 254
Target Start/End: Original strand, 40099336 - 40099413
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaa-ccaggaccgtggttaagctagaagagacccgtaccat 254  Q
    |||||||||| ||||||||||  |||| ||||||||||||  ||||| | | ||||||||||||||||||||| ||||    
T  40099336 agagttttaatgctgctgcatatccaaagctggattcgaattcaggatcttagttaagctagaagagacccgttccat 40099413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 28537467 - 28537390
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaa-ccaggaccgtggttaagctagaagagacccgtaccat 254  Q
    |||||||||| | || |||||| ||||||||||||||||| |||  ||| || ||||| |||||||||||||| ||||    
T  28537467 agagttttaacgttgttgcatgcccaaggctggattcgaacccaaaaccttgattaagttagaagagacccgttccat 28537390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 35707907 - 35707855
Alignment:
Q  194 tgcatggccaaggctggattcgaaccaggaccgtggttaagctagaagagacc 246  Q
    |||||| |||| | |||||||||||||| ||| ||||||| ||||||||||||    
T  35707907 tgcatgtccaaagttggattcgaaccagaaccttggttaaactagaagagacc 35707855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 26408 - 26336
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaa-ccaggaccgtggttaagctagaagagacccgt 249  Q
    ||||||||||  |||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  26408 agagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagacccgt 26336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 10592004 - 10591927
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaa-ccaggaccgtggttaagctagaagagacccgtaccat 254  Q
    ||||||||||  |||||||||| ||||||||||||||||| |||||||| ||||||| ||||||||||||||| ||||    
T  10592004 agagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaatctagaagagacccgttccat 10591927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 2798381 - 2798444
Alignment:
Q  180 agttttaaagctgctgcatggccaaggctggattcgaa-ccaggaccgtggttaagctagaaga 242  Q
    |||||||| |||||||||||  ||||| |||||||||| |||| ||| ||||||||||||||||    
T  2798381 agttttaacgctgctgcatgctcaaggttggattcgaacccagaaccttggttaagctagaaga 2798444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 18909365 - 18909428
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaacc-aggaccgtggttaagctagaa 240  Q
    ||||||||||  |||||||||  ||||||||||||||||||| |||||| || |||||||||||    
T  18909365 agagttttaacactgctgcatacccaaggctggattcgaacctaggaccttgattaagctagaa 18909428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 275
Target Start/End: Original strand, 30785050 - 30785148
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaa-ccaggaccgtggttaagctagaagagacccgtaccattttatttaaatggtattgggt 275  Q
    |||||||||| | ||||||||| |||| |||||||||||| ||| |||  || |||||||||||||||| ||| |||| | || |||||| | ||||||    
T  30785050 agagttttaacgttgctgcatgtccaaagctggattcgaacccaagacattgattaagctagaagagactcgttccatctcatctaaatgctcttgggt 30785148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 254
Target Start/End: Original strand, 28023532 - 28023584
Alignment:
Q  203 aaggctggattcgaac-caggaccgtggttaagctagaagagacccgtaccat 254  Q
    |||||||||||||||| ||||||  |||||||||||||||||| |||| ||||    
T  28023532 aaggctggattcgaactcaggacattggttaagctagaagagatccgttccat 28023584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 178 - 254
Target Start/End: Original strand, 44732637 - 44732714
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaa-ccaggaccgtggttaagctagaagagacccgtaccat 254  Q
    ||||||||||  |||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||    
T  44732637 agagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctataagagacccgttccat 44732714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 178 - 254
Target Start/End: Original strand, 37568791 - 37568868
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaa-ccaggaccgtggttaagctagaagagacccgtaccat 254  Q
    ||||||||||  |||||||||| | ||||||||||||||| |||||||| |||||||||||||||| |||||| ||||    
T  37568791 agagttttaacactgctgcatgcctaaggctggattcgaacccaggaccttggttaagctagaagaaacccgttccat 37568868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 5394461 - 5394397
Alignment:
Q  191 tgctgcatggccaaggctggattcgaacc-aggaccgtggttaagctagaagagacccgtaccat 254  Q
    ||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||| ||| ||||    
T  5394461 tgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagactcgttccat 5394397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 254
Target Start/End: Original strand, 12133294 - 12133371
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaa-ccaggaccgtggttaagctagaagagacccgtaccat 254  Q
    |||||||||| | ||||||||| ||||||||||||||||| ||| |||| || |||||||||||||||| ||| ||||    
T  12133294 agagttttaacgttgctgcatgtccaaggctggattcgaacccatgaccttgattaagctagaagagactcgttccat 12133371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 254
Target Start/End: Original strand, 18105442 - 18105503
Alignment:
Q  194 tgcatggccaaggctggattcgaacc-aggaccgtggttaagctagaagagacccgtaccat 254  Q
    |||||| ||||||||||||||||||| |||||| ||||||||||||||||||| ||| ||||    
T  18105442 tgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagactcgttccat 18105503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 254
Target Start/End: Original strand, 42745180 - 42745257
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaa-ccaggaccgtggttaagctagaagagacccgtaccat 254  Q
    ||||||||||   ||||||||| ||||||||||||||||| ||| |||| ||||||||||| ||||||||||| ||||    
T  42745180 agagttttaacattgctgcatgcccaaggctggattcgaacccaagaccttggttaagctataagagacccgttccat 42745257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 31579295 - 31579365
Alignment:
Q  180 agttttaaagctgctgcatggccaaggctggattcgaa-ccaggaccgtggttaagctagaagagacccgt 249  Q
    ||||||||  ||| |||||| ||||||||||||||||| ||| |||| || ||||||||||||||||||||    
T  31579295 agttttaacactgttgcatgcccaaggctggattcgaacccaagaccttgattaagctagaagagacccgt 31579365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 178 - 244
Target Start/End: Original strand, 9438200 - 9438267
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaacc-aggaccgtggttaagctagaagaga 244  Q
    ||||||||||  |||||||||| ||||||||||||||||||| | |||  ||||||||||| ||||||    
T  9438200 agagttttaaccctgctgcatgcccaaggctggattcgaaccaaagactttggttaagctaaaagaga 9438267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 28366015 - 28365949
Alignment:
Q  189 gctgctgcatggccaaggctggattcgaac-caggaccgtggttaagctagaagagacccgtaccat 254  Q
    ||||||||||| ||||||||| |||||||| || |||| |||||||| |||||||||| ||| ||||    
T  28366015 gctgctgcatgcccaaggctgcattcgaactcacgaccttggttaagttagaagagacgcgttccat 28365949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 993820 - 993763
Alignment:
Q  189 gctgctgcatggccaaggctggattcgaacc-aggaccgtggttaagctagaagagac 245  Q
    ||||||||||| |||||| || ||||||||| |||||| ||||||||||| |||||||    
T  993820 gctgctgcatgcccaaggttgaattcgaacccaggaccttggttaagctataagagac 993763  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 244
Target Start/End: Original strand, 42905678 - 42905755
Alignment:
Q  167 caaactcttttagagttttaaagctgctgcatggccaaggctggattcgaaccaggaccgtggttaagctagaagaga 244  Q
    |||||||||  ||||||||||  |||||||||| | |||  ||||||||||| |||||| | ||||||||| ||||||    
T  42905678 caaactcttccagagttttaacactgctgcatgacaaagtttggattcgaactaggaccttagttaagctaaaagaga 42905755  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 245
Target Start/End: Complemental strand, 17627620 - 17627568
Alignment:
Q  194 tgcatggccaaggctggattcgaac-caggaccgtggttaagctagaagagac 245  Q
    |||||| |||||||||||||||||| ||||||| |||||||  ||||||||||    
T  17627620 tgcatgcccaaggctggattcgaactcaggaccttggttaaattagaagagac 17627568  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 38088712 - 38088640
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaaccagg-accgtggttaagctagaagagacccgt 249  Q
    |||||||||| ||| ||||||| |||| |||||||||||||| || ||| |||||||||||||||||||||||    
T  38088712 agagttttaacgctactgcatgcccaaagctggattcgaacctggaaccttggttaagctagaagagacccgt 38088640  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 254
Target Start/End: Original strand, 48204378 - 48204452
Alignment:
Q  181 gttttaaagctgctgcatggccaaggctggattcgaa-ccaggaccgtggttaagctagaagagacccgtaccat 254  Q
    ||||||| | ||||||||| ||||||||||||||||| ||| |||| ||||||||||||||||||| ||| ||||    
T  48204378 gttttaacgttgctgcatgcccaaggctggattcgaacccaagaccttggttaagctagaagagactcgttccat 48204452  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 254
Target Start/End: Original strand, 30996029 - 30996106
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaacc-aggaccgtggttaagctagaagagacccgtaccat 254  Q
    |||||||||| |||| |||||| ||||||  ||||||||||| |||||| |||||||| |||||||||||||| ||||    
T  30996029 agagttttaacgctgttgcatgcccaaggtcggattcgaacccaggaccttggttaagatagaagagacccgttccat 30996106  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 25224776 - 25224704
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaacc-aggaccgtggttaagctagaagagacccgt 249  Q
    |||||||||| ||||||||||  ||||  || |||||||||| |||||| |||||||||||||||||||||||    
T  25224776 agagttttaacgctgctgcattcccaaaacttgattcgaacccaggaccttggttaagctagaagagacccgt 25224704  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 247
Target Start/End: Complemental strand, 22755721 - 22755651
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaacc-aggaccgtggttaagctagaagagaccc 247  Q
    |||||||||| ||||||||||| ||||||||||||||||||| || ||  ||||||| |||||| ||||||    
T  22755721 agagttttaatgctgctgcatgcccaaggctggattcgaacctagtactttggttaacctagaatagaccc 22755651  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 27763798 - 27763737
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaa-ccaggaccgtggttaagctag 238  Q
    ||||||||||  ||| || ||| ||||||||||||||||| |||||||| ||||||||||||    
T  27763798 agagttttaacactgttgtatgcccaaggctggattcgaacccaggaccttggttaagctag 27763737  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 249
Target Start/End: Original strand, 48211024 - 48211096
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaacc-aggaccgtggttaagctagaagagacccgt 249  Q
    |||||||||| | |||||||||  |||||||||||||||||| |  ||| || ||||| ||||||||||||||    
T  48211024 agagttttaacgttgctgcatgctcaaggctggattcgaaccaaaaaccttgattaagttagaagagacccgt 48211096  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 178 - 245
Target Start/End: Complemental strand, 29124822 - 29124754
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaac-caggaccgtggttaagctagaagagac 245  Q
    |||||||||| ||||||||||| |||| ||||||||||||| || |||| |||||||||||||||||||    
T  29124822 agagttttaacgctgctgcatgcccaatgctggattcgaactcatgaccctggttaagctagaagagac 29124754  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 45806313 - 45806241
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaac-caggaccgtggttaagctagaagagacccgt 249  Q
    ||||||||||| |||||||||| ||||| ||| |||||||| ||||||| |||||||| ||||||||||||||    
T  45806313 agagttttaaaactgctgcatgcccaagactgaattcgaactcaggaccttggttaagatagaagagacccgt 45806241  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 246
Target Start/End: Complemental strand, 22022197 - 22022128
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaa-ccaggaccgtggttaagctagaagagacc 246  Q
    |||||||||| ||||||||||| ||||||||||||||||| |||  ||| | ||||||||||||||||||    
T  22022197 agagttttaatgctgctgcatgcccaaggctggattcgaacccacaaccttagttaagctagaagagacc 22022128  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 9781053 - 9781093
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaac 218  Q
    |||||||||| ||||||||||| ||||||||||||||||||    
T  9781053 agagttttaacgctgctgcatgcccaaggctggattcgaac 9781093  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 112
Target Start/End: Complemental strand, 52017836 - 52017764
Alignment:
Q  40 aatgtggtgatctgggttcgaattcgaggttccacataaaacgtcctcaaagtcaaaccactaggttgtaaca 112  Q
    |||||||||| |||||||||||| |  ||||||||| |||| ||||||| || |||||||||| |||| ||||    
T  52017836 aatgtggtgacctgggttcgaatccagggttccacacaaaatgtcctcacagccaaaccactatgttgcaaca 52017764  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 14500358 - 14500399
Alignment:
Q  213 tcgaaccaggaccgtggttaagctagaagagacccgtaccat 254  Q
    |||| |||||||| ||||||||||||||||||||||| ||||    
T  14500358 tcgacccaggaccttggttaagctagaagagacccgttccat 14500399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 16756159 - 16756082
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaacc-aggaccgtggttaagctagaagagacccgtaccat 254  Q
    |||||||||| ||| ||||||| |||| |||| |||| |||| || ||| |||||||||||||||||| |||| ||||    
T  16756159 agagttttaacgcttctgcatgcccaatgctgaattcaaacccagaaccttggttaagctagaagagatccgttccat 16756082  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 32883634 - 32883699
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaacc-aggaccgtggttaagctagaaga 242  Q
    |||||||||| ||||||||||| |||| |||||||||||||| |  | | ||||||||||||||||    
T  32883634 agagttttaacgctgctgcatgtccaatgctggattcgaacccaaaatcttggttaagctagaaga 32883699  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 249
Target Start/End: Original strand, 17600562 - 17600634
Alignment:
Q  178 agagttttaaagctgctgcatggccaaggctggattcgaacc-aggaccgtggttaagctagaagagacccgt 249  Q
    |||||||||| | || ||||||  |||||||| |||| |||| | |||| |||||||||||||||||||||||    
T  17600562 agagttttaacgatgttgcatgctcaaggctgaattctaacccaagaccttggttaagctagaagagacccgt 17600634  T

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Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 266
Target Start/End: Original strand, 32330 - 32417
Alignment:
Q  180 agttttaaagctgctgcatggccaaggctggattcgaacc-aggaccgtggttaagctagaagagacccgtaccattttatttaaatg 266  Q
    |||||||| ||||||||||  |||||  |||||||||||| || ||| |||| |||||||||||||||||| |||| |||| ||||||    
T  32330 agttttaacgctgctgcatacccaagattggattcgaacccagaaccttggtgaagctagaagagacccgttccatcttatctaaatg 32417  T

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Target: scaffold0020 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 167919 - 167860
Alignment:
Q  189 gctgctgcatggccaaggctggattcgaaccaggaccgtggttaagctagaagagacccgt 249  Q
    ||||||||||| ||||||||||||| |||||  |||| || ||||||||||||||||||||    
T  167919 gctgctgcatgcccaaggctggatttgaacc-cgaccttgattaagctagaagagacccgt 167860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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