View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18089_low_38 (Length: 296)
Name: NF18089_low_38
Description: NF18089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18089_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 20 - 283
Target Start/End: Original strand, 39054471 - 39054734
Alignment:
| Q |
20 |
agtgtctgttttggggtattgtgcaaaaccttcacggtttattatgtaaaagacatctcacatacccagatgtgttagtgttgttcataaactaacttta |
119 |
Q |
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| T |
39054471 |
agtgtatgatttggggtattgtgcaaaaccttcacggtttattatgtaaaagacatctcacatacccagatgtgttagtgttgttcataaattaacttta |
39054570 |
T |
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| Q |
120 |
gtcttcaatttcaagcaaagtaagactttttgttgtatcaaaagactggaccgggacaaaattatcaatatatttttgttgtaactttagcttctcaaaa |
219 |
Q |
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| T |
39054571 |
gccttcaatttcaagcaaaggaagactttttgttgtatcaaaagactggacggggacaaaattatcaatatatttttgttgtaactttagcttctcagaa |
39054670 |
T |
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| Q |
220 |
agactattaattaataatatacatgatgtaaacataggaaccttatggccacacctgctgatga |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39054671 |
agactattaattaataatatacatgatgtaaacataggaaccttatggccacacctgctgatga |
39054734 |
T |
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