View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18089_low_39 (Length: 296)
Name: NF18089_low_39
Description: NF18089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18089_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 275
Target Start/End: Complemental strand, 18252895 - 18252639
Alignment:
| Q |
19 |
cgtttacaccgggaaattgttcgtctattgcagtggtaacagcggctttgataatgtttgtggtgtttccagctgcggctaggccgtggtagacgaagtc |
118 |
Q |
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| T |
18252895 |
cgtttacaccgggaaattgtgcgtctattgcagtggtaacagcggctttgataatgtttgtggtgtttccagctgcggctaggccgtggtagacgaagtc |
18252796 |
T |
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| Q |
119 |
attcacggttacttttgatggtggtttgcaagaatatccagccgggccatttggtgcattgtaatctgctacgcagaaatctactacggatgcatgagca |
218 |
Q |
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| T |
18252795 |
attcacggttacttttgatggtggtttgcaagaatatccagccgggccatttggtgcattgtaatctgctacgcagaaatctactacggatgcatgagca |
18252696 |
T |
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| Q |
219 |
agggaaagaagagaaaaaatgaagaagatagttagaatcatcttcatgtttttgttg |
275 |
Q |
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| T |
18252695 |
agggaaagaagagaaaaaatgaagaagatagttagaatcatcttcatgttattgttg |
18252639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 18256673 - 18256929
Alignment:
| Q |
19 |
cgtttacaccgggaaattgttcgtctattgcagtggtaacagcggctttgataatgtttgtggtgtttccagctgcggctaggccgtggtagacgaagtc |
118 |
Q |
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| T |
18256673 |
cgtttacaccgggaaattgtgcgtctattgcagtggtaacagcggctttgataatgtttgtggtgtttccagctgcggctaggccgtggtagacgaagtc |
18256772 |
T |
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| Q |
119 |
attcacggttacttttgatggtggtttgcaagaatatccagccgggccatttggtgcattgtaatctgctacgcagaaatctactacggatgcatgagca |
218 |
Q |
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| T |
18256773 |
attcacggttacttttgatggtggtttgcaagaatatccagccgggccatttggtgcattgtaatctgctacgcagaaatctactacggatgcatgagca |
18256872 |
T |
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| Q |
219 |
agggaaagaagagaaaaaatgaagaagatagttagaatcatcttcatgtttttgttg |
275 |
Q |
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| T |
18256873 |
agggaaagaagagaaaaaatgaagaagatagttagaatcatcttcatgttattgttg |
18256929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 47 - 265
Target Start/End: Complemental strand, 18245763 - 18245545
Alignment:
| Q |
47 |
tgcagtggtaacagcggctttgataatgtttgtggtgtttccagctgcggctaggccgtggtagacgaagtcattcacggttacttttgatggtggtttg |
146 |
Q |
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| T |
18245763 |
tgcaggggtcacagctgctttgataatgtttgaggtgtttccggctgcagctaggccgtggtaggcgaagtcattttcggttacttttgatggtgttttg |
18245664 |
T |
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| Q |
147 |
caagaatatccagccgggccatttggtgcattgtaatctgctacgcagaaatctactacggatgcatgagcaagggaaagaagagaaaaaatgaagaaga |
246 |
Q |
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||||||||||| || |||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||| |
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| T |
18245663 |
caagaatatccggcggggccatttggtaaattgtaatctgctacgcagaaatctactactgatgcatgagaaagggaaagaagagaaaaaatgaaggaga |
18245564 |
T |
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| Q |
247 |
tagttagaatcatcttcat |
265 |
Q |
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||| || |||||||||||| |
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| T |
18245563 |
tagctacaatcatcttcat |
18245545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 265
Target Start/End: Complemental strand, 30570681 - 30570611
Alignment:
| Q |
195 |
aaatctactacggatgcatgagcaagggaaagaagagaaaaaatgaagaagatagttagaatcatcttcat |
265 |
Q |
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||||||||||| |||||||||| | ||||| ||||||||||| ||| ||||||| |||||||||||||| |
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| T |
30570681 |
aaatctactactgatgcatgagagaaggaaataagagaaaaaacgaataagatagcaagaatcatcttcat |
30570611 |
T |
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