View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18089_low_41 (Length: 294)
Name: NF18089_low_41
Description: NF18089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18089_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 19 - 285
Target Start/End: Complemental strand, 10162039 - 10161773
Alignment:
| Q |
19 |
tttttccacacgatttttcccttcaacaatattcaccttcatcatgttgttcaccaaagctattgttcatcaattttaatttgtggtattattagaataa |
118 |
Q |
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| T |
10162039 |
tttttccacacgatttttcccttcaacaatattcaccttcatcatgttgttcaccaaagctattgttcatcaattttaatttgtggtattattagaataa |
10161940 |
T |
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| Q |
119 |
tatctcttaatgaaaacagaccataatgtatttgcctcctttgcatgagcatatatggaggcaacccctcgcttccaccaagctccgcaaggaagatctg |
218 |
Q |
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| T |
10161939 |
tatctcgtaatgaaaacataccataatgtatttgcctcctttgcatgagcatatatggaggcaacccctcgcttccaccaagctccgcaaggaagatctg |
10161840 |
T |
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| Q |
219 |
aagggttttgtttgtcatctttggaagagttatttgacagtgataaatcatctggagatacctttgt |
285 |
Q |
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| T |
10161839 |
aagggttttgtttgtcatctttggaagagttatttgacagtgataaatcatcaggagatacctttgt |
10161773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 127 - 285
Target Start/End: Original strand, 29412249 - 29412407
Alignment:
| Q |
127 |
aatgaaaacagaccataatgtatttgcctcctttgcatgagcatatatggaggcaacccctcgcttccaccaagctccgcaaggaagatctgaagggttt |
226 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29412249 |
aatgaaaacggaccataatgtatttgcctcctttgcatgagcatatatggaggcaactcctcgcttccaccaagctccgcaaggaagacctgaagggttt |
29412348 |
T |
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| Q |
227 |
tgtttgtcatctttggaagagttatttgacagtgataaatcatctggagatacctttgt |
285 |
Q |
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| T |
29412349 |
tgtttgtcatctttggaagagttatttgacagtgataaatcatcaggagatacctttgt |
29412407 |
T |
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