View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18089_low_45 (Length: 275)
Name: NF18089_low_45
Description: NF18089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18089_low_45 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 262
Target Start/End: Original strand, 43016891 - 43017134
Alignment:
| Q |
19 |
tagaaaacccccaaacacagtcgtgagcttttgacatcgttttcattcgctggtggaagaaaagaaaacggaagggaaaagagaaaggggtaggcaagaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43016891 |
tagaaaacccccaaacacagtcgtgagcttttgacaccgttttcattcgctggtggaagaaaagaaaacggaagggaaaagagaaaggggtaggcaagaa |
43016990 |
T |
|
| Q |
119 |
gatagtcatttgatgatcttgatgggatattacgtgatagtaacaagcatctatatatcaagcacgaacacagacaacggacacaacaaagacactaaca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43016991 |
gatagtcatttgatgatcttgatgggatattacgtgatagtaacaagcatctatatatcaagcacgaacacagacaacggacacaacaaagacactaaca |
43017090 |
T |
|
| Q |
219 |
tgttgaaacaattaattctacacctgcataatcgagttcatctc |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43017091 |
tgttgaaacaattaattctacacctgcataatcgagttcatctc |
43017134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University