View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18089_low_47 (Length: 274)
Name: NF18089_low_47
Description: NF18089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18089_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 10161796 - 10161533
Alignment:
| Q |
1 |
taaatcatctggagatacctttgtctcctgctctgctgattcggttgtttcagactcaactacgttttcatcgtatgctgtcacagcaccaatgtctgtt |
100 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
10161796 |
taaatcatcaggagatacctttgtctcctgctctgctgattcggttgtttcagactcaactacgttttcatcgtatgctgtcacaacaccaatgtctgtt |
10161697 |
T |
|
| Q |
101 |
tcactggggaaagaagtgtattttgcagggctatgatatatattttcctctttttcagtcaaaccaaaatctggtagagttgtaccttcctcaaactgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
10161696 |
tcactggggaaagaagtgtattttgcagggctatgatatatactttcctctttttcagtcaaaccaaaatctggtagagttgtaccttcctcaaactatt |
10161597 |
T |
|
| Q |
201 |
ttccatgaatagataatctgttgattttctcatcataatatttcatatcctcaaactccctttg |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10161596 |
ttccatgaatagataatctgttgattttctcatcataatatttcatatcctcaaactccctttg |
10161533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 29412384 - 29412642
Alignment:
| Q |
1 |
taaatcatctggagatacctttgtctcctgctctgctgattcggttgtttcagactcaactacgttttcatcgtatgctgtcacagcaccaatgtctgtt |
100 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
29412384 |
taaatcatcaggagatacctttgtctcctgctctgctgattcggttgtttcagacccaactacgttttcattgtatgctgtcacagcaccaatgtctgtt |
29412483 |
T |
|
| Q |
101 |
tcactggggaaagaagtgtattttgcagggctatgatatatattttcctctttttcagtcaaaccaaaatctggtagagttgtaccttcctcaaactgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29412484 |
tcactggggaaagaagtgtattttgcagggctatgatatatactttcctctttttcagtcaaaccaaaatctggtagagttgtaccttcctcaaactgtt |
29412583 |
T |
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| Q |
201 |
ttccatgaatagataatctgttgattttctcatcataatatttcatatcctcaaactcc |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29412584 |
ttccatgaatagataatctgttgattttctcatcataatatttcatatcctcaaactcc |
29412642 |
T |
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