View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18089_low_48 (Length: 268)
Name: NF18089_low_48
Description: NF18089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18089_low_48 |
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| [»] scaffold0019 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 230
Target Start/End: Complemental strand, 45768512 - 45768298
Alignment:
| Q |
16 |
cactgctgataatagtccacaaacattttctgtttcttcaagaaatggaagtggtgtaagaagaaataccccctttacacctacaagaagtgagtgttca |
115 |
Q |
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| T |
45768512 |
cactgctgataatagtccacaaacattttctgcttcttcaagaaatggaagtggtgtaagaagaaataccccctttacacctacaagaagtgagtgttca |
45768413 |
T |
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| Q |
116 |
tggagtttcttaggtggttactctggttaccctaattacatggcaaacactgaatcttctaaagctaaggttagatcacaaagtgcaccaagacaaatgc |
215 |
Q |
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| T |
45768412 |
tggagtttcttaggtggttactctggttaccctaattacatggcaaacactgaatcttctagagctaaggttagatcacaaagtgcaccaagacaaaggc |
45768313 |
T |
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| Q |
216 |
atgagtttgaggaat |
230 |
Q |
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| T |
45768312 |
atgagtttgaggaat |
45768298 |
T |
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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 212
Target Start/End: Original strand, 46632696 - 46632757
Alignment:
| Q |
151 |
ttacatggcaaacactgaatcttctaaagctaaggttagatcacaaagtgcaccaagacaaa |
212 |
Q |
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| T |
46632696 |
ttacatggctaatacagaatcatcaagagctaaagttagatcacaaagtgcaccaaaacaaa |
46632757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 226
Target Start/End: Complemental strand, 39810 - 39673
Alignment:
| Q |
89 |
tttacacctacaagaagtgagtgttcatggagtttcttaggtggttactctggttaccctaattacatggcaaacactgaatcttctaaagctaaggtta |
188 |
Q |
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| T |
39810 |
tttacacctactaaaagtgagagttcatggggatttttcaatgctcactctggttatcctagttatatggcaaatactcaatcttctagggctaaggtta |
39711 |
T |
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| Q |
189 |
gatcacaaagtgcaccaagacaaatgcatgagtttgag |
226 |
Q |
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| T |
39710 |
ggtcacaaagtgctccaagacaaaggcttgagtttgag |
39673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 268
Target Start/End: Original strand, 42635335 - 42635406
Alignment:
| Q |
197 |
agtgcaccaagacaaatgcatgagtttgaggaatcgagttcgtcaaatgggtactcactaaatggacacgac |
268 |
Q |
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| T |
42635335 |
agtgcaccaaaacaaaggcctcaatatgagaaatcaagttcgtcaaataggtactcactaaatggacacgac |
42635406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 268
Target Start/End: Complemental strand, 44096242 - 44096159
Alignment:
| Q |
185 |
gttagatcacaaagtgcaccaagacaaatgcatgagtttgaggaatcgagttcgtcaaatgggtactcactaaatggacacgac |
268 |
Q |
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| T |
44096242 |
gttagatctctaagtgcaccaaaacaaaggcctcaatatgagaaatcgggttcgtcaaataggtactcactcaatggacacgac |
44096159 |
T |
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