View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18089_low_49 (Length: 262)
Name: NF18089_low_49
Description: NF18089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18089_low_49 |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 1020703 - 1020933
Alignment:
| Q |
18 |
aaattgagcattgacaacaattagataaagcatgacacccttttgaatgtgtaaattacaaactataagtatgtagtagcatgttaaatatactaatata |
117 |
Q |
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| T |
1020703 |
aaattgagcattgacaacaattagataaagcatgacacccttttgaatgtgtaaattacaaactataagtatgtagtagcatgttaaatatactaatata |
1020802 |
T |
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| Q |
118 |
aaccaagtttattgtatactcaccttagtttgattcaatgcagtagcacttatattgtcaccttttatctaaatttccatgnnnnnnnnnttgtacactt |
217 |
Q |
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| T |
1020803 |
aaccaagtttattgtatactcgccttagtttgattcaatgcagtagcacttatattgtcaccttttatctaaatttccatgaaaaaaaaattgtacactt |
1020902 |
T |
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| Q |
218 |
aaaagaaaacaatgtattgacaaagtataat |
248 |
Q |
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|||| ||||||| |||||||||||||||||| |
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| T |
1020903 |
aaaaaaaaacaacgtattgacaaagtataat |
1020933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 84
Target Start/End: Original strand, 37709290 - 37709320
Alignment:
| Q |
54 |
acccttttgaatgtgtaaattacaaactata |
84 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
37709290 |
acccttttgaatgtgtaaattacaaactata |
37709320 |
T |
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