View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18089_low_5 (Length: 572)
Name: NF18089_low_5
Description: NF18089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18089_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 282 - 563
Target Start/End: Complemental strand, 54733543 - 54733262
Alignment:
| Q |
282 |
tcacatagttgtttgttcattaaacagaagaagacacataaaggtttaaccttagtttacaatccaattttcacacaaattacatacacagattagctag |
381 |
Q |
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| T |
54733543 |
tcacatagttgtttgttcattaaacagaagaagacacataaaggtttaaccttagtttacaatccaattttcaaacaaattacatacacagattagctag |
54733444 |
T |
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| Q |
382 |
gaataaatatggtttgtacttcatttattcgtagcttctgttgtcttgcaatgaatgcctccacggtgcgacgaaattcgtcgctgctcattccatcttc |
481 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
54733443 |
gaataaatatggtttgtacttcatttattcgtagcttccgttgtcttgcaatgaatgcctccaccgtgcgacgaaattcgtcgctgctcattccatcttc |
54733344 |
T |
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| Q |
482 |
gggatataaactccattttttctctttatcaacttcaatgtttttcctcttactcttatcattatcactctcacacctttgc |
563 |
Q |
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| T |
54733343 |
aggatataaactccattttttctctttatcaacttcaatgtttttcctcttactcttatcattatcactctcacacctttgc |
54733262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 125 - 256
Target Start/End: Complemental strand, 54733669 - 54733538
Alignment:
| Q |
125 |
actaccataaaaaccaaattggaaaacaccaccatgttttctaactcgaaactcaacaaaattagattaatagactcaaatgtttataatccaaatagtt |
224 |
Q |
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| T |
54733669 |
actaccataaaaaccaaattggaaaacaccaccatgttttctaactagaaacccaacaaaattagattaatagactcaaatgtttataatccaaatactt |
54733570 |
T |
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| Q |
225 |
atttactcacttgccctaatctttatttacat |
256 |
Q |
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| T |
54733569 |
attcactcacttgccctaatctttattcacat |
54733538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 54733814 - 54733703
Alignment:
| Q |
17 |
aataagagtgtgtttagcttctccccattgaggcaacctaactaattattttccatggtgacaagttgttgaaccgcatcacagtaagacagacattcaa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
54733814 |
aataagagtgtgtttagcttctccccattgaggcaacctaactaattattttccatggtgacaagttgttgaaccgcatcacagtaagacagacattaaa |
54733715 |
T |
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| Q |
117 |
tcttacgtacta |
128 |
Q |
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| T |
54733714 |
tcttacgtacta |
54733703 |
T |
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