View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18089_low_53 (Length: 238)
Name: NF18089_low_53
Description: NF18089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18089_low_53 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 23284677 - 23284456
Alignment:
| Q |
1 |
gttcactcgaagccacgtctctatcctcaaatcagatgtcacttacaatttttgaggcaagatagattatgaagaatcaaagcaataaaatctgtattct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23284677 |
gttcactcgaagccacgtctctatcctcaaatcagatgtcacttacaatttttgaggcaagatagattatgaagaatcaaagcaataaaatctgtattct |
23284578 |
T |
|
| Q |
101 |
gatatagtttccaaatttatagagtgaacctgtaaatgtatatgtagcttccttttgttgatatgaatcgttcatatctcctttgataaattattacaaa |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23284577 |
gatatagcttccaaatttatagagtgaacctgtaaatgtatatgtagcttccttttgttgatatgaatcgttcatatctcctttgataaattattacaaa |
23284478 |
T |
|
| Q |
201 |
cttgtttattgattcaaaatat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
23284477 |
cttgtttattgattcaaaatat |
23284456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 23393893 - 23394107
Alignment:
| Q |
1 |
gttcactcgaagccacgtctctatcctcaaatcagatgtcacttacaatttttgaggcaagatagattatgaagaatcaaagcaataaaatctgtattct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
23393893 |
gttcactcgaagccacgtctctatcctcaaatcagatgtcacttacaatttttgaggcaagatagattatgaagaatcaaatcaataaaatctgtattct |
23393992 |
T |
|
| Q |
101 |
gatatagtttccaaatttatagagtgaacctgtaaatgtatatgtagcttccttttgttgatatgaatcgttcatatctcctttgataaattattacaaa |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23393993 |
gatatagcttccaaatttatagagtgaacctgtaaatgtatatgtagcttcctt---ttgatatgaatcgttcatatctcctttgataaattattacaaa |
23394089 |
T |
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| Q |
201 |
cttgtttattgattcaaa |
218 |
Q |
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|||||||||||||||||| |
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| T |
23394090 |
cttgtttattgattcaaa |
23394107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 23415549 - 23415614
Alignment:
| Q |
9 |
gaagccacgtctctatcctcaaatcagatgtcacttacaatttttgaggcaagatagattatgaag |
74 |
Q |
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|||||||| || | ||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
23415549 |
gaagccacatcaccatcctcaaatcagatgtcacttacatattttgaggcaagatagaatatgaag |
23415614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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