View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18089_low_55 (Length: 237)
Name: NF18089_low_55
Description: NF18089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18089_low_55 |
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Alignment Details
Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 42481006 - 42480923
Alignment:
| Q |
1 |
agcttcttcagattgatgagaagtgctaggaccaggaatgtcagtaacaacatttgaggaagaaggaacatcataaggagtaat |
84 |
Q |
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| T |
42481006 |
agcttcttcagattgatgagaagtgctaggaccaggaatgtcagtaacaacatttgaggaagaaggaacatcataaggagtaat |
42480923 |
T |
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Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 160 - 219
Target Start/End: Complemental strand, 42480847 - 42480788
Alignment:
| Q |
160 |
ggtctaaaagctaaaaaagtggggaatgaacaagtagaaacgggaccagaaaggaacaaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42480847 |
ggtctaaaagctaaaaaagtggggaatgaacaagtagaaacgggaccagaaaggaacaaa |
42480788 |
T |
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