View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18089_low_57 (Length: 230)
Name: NF18089_low_57
Description: NF18089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18089_low_57 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 52805163 - 52804942
Alignment:
| Q |
1 |
catggaaggtaaagaagtaaagattagtcttgcacttggcaatgatgattcaagtgaaaaggtgggaaatataaccgatacagcgctacaacaagctcat |
100 |
Q |
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| T |
52805163 |
catggaaggtaaagaagtaaagattagtcttgcacttggcaatgatgattcaagtgaaaaggtgggaaatataaccgatacagcgctacaacaagctcat |
52805064 |
T |
|
| Q |
101 |
gtttgtaaactattgcaggagaatgtgccatggcaatctgaaactattccttcaatatcaaaagccttgtttgataccaaatcaacaaaacaaaatgaga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
52805063 |
gtttgtaaactattgcaggagaatgtgccatggcaatctgaaactattccttcaatatcaaaagccttgtttgataccaaatcaacaaaactaaatgaga |
52804964 |
T |
|
| Q |
201 |
tttcatttacatggttattttt |
222 |
Q |
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||||||||| |||||||||||| |
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| T |
52804963 |
tttcatttagatggttattttt |
52804942 |
T |
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