View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18089_low_61 (Length: 219)
Name: NF18089_low_61
Description: NF18089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18089_low_61 |
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Alignment Details
Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 25619923 - 25620033
Alignment:
| Q |
20 |
gtaaatagagaatgtagaaaagattctgattcctctttatttggtcttgtttaaagttgttg---tatttcaaagttcaaacaagtttgtcagcttatta |
116 |
Q |
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| T |
25619923 |
gtaaatagagaatgtagaaaagattgtgcttcatctttatttggttttgtttatagttgatgtattatttcaaagttcaaacaagtttatcagcttatca |
25620022 |
T |
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| Q |
117 |
cattcaagtat |
127 |
Q |
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||||| |||| |
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| T |
25620023 |
tattcatgtat |
25620033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 149 - 202
Target Start/End: Original strand, 25628402 - 25628455
Alignment:
| Q |
149 |
atctacaacttagattttggtgttaagtagattgtactattgggatgatatatt |
202 |
Q |
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| T |
25628402 |
atctacaacttagatttcggttttaagtagattgtactattgggatgatatatt |
25628455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 28 - 129
Target Start/End: Original strand, 25626036 - 25626141
Alignment:
| Q |
28 |
agaatgtagaaaagattctgattcctctttatttggtcttgtttaaag----ttgttgtatttcaaagttcaaacaagtttgtcagcttattacattcaa |
123 |
Q |
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|||||||||||| |||| ||||||||| ||||||||||| |||||||| | |||| ||||||||||||||||||||| | ||||||||| |||| | |
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| T |
25626036 |
agaatgtagaaaggattgtgattcctccttatttggtctggtttaaaggttatgtttgtttttcaaagttcaaacaagtttataagcttattatattcga |
25626135 |
T |
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| Q |
124 |
gtatgc |
129 |
Q |
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|||||| |
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| T |
25626136 |
gtatgc |
25626141 |
T |
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