View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18089_low_8 (Length: 497)
Name: NF18089_low_8
Description: NF18089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18089_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 479
Target Start/End: Original strand, 12242732 - 12243210
Alignment:
| Q |
1 |
ccttaacaaaatcatggtaaaatttcaagtcaacccaaatgggttccccttgtcattcacttctgtgttatgcttatgtactttttattccttggaatag |
100 |
Q |
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| T |
12242732 |
ccttaacaaaatcatggtaaaatttcaagtcaacccaaatgggttccccttgtcattcacttctgtgttatgcttatgtactttttattcctaggaatag |
12242831 |
T |
|
| Q |
101 |
gatttactcacacattttcatgg-aataagagataactttccattaccacatcatttgaacacatta-----annnnnnnnatagattaaatcannnnnn |
194 |
Q |
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|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
12242832 |
gatttact--cacattttcatggaaataagagataactttccattaccacatcatttgaacacattaattttattttttttatagattaaatcatttttt |
12242929 |
T |
|
| Q |
195 |
ngaaagttctagattaaatcatttgaaaatatttcttggaaactaaattagttaccaaacacatagataggattcaaattcctagtaatcatgttccaag |
294 |
Q |
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||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12242930 |
tgaaagttttagattaaatcatttgaaaatattttttggaaactaaattagttaccaaacacatagataggattcaaattcctagtaatcatgttacaag |
12243029 |
T |
|
| Q |
295 |
aaataatactcctaaaattgtgattaactttccnnnnnnncacaccttaattaagatttttgatgaatatatgatgttcaaagtgttcaaccgtgtaagg |
394 |
Q |
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|||| |||||||||| ||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
12243030 |
aaatgatactcctaagattgtgattaacttt-cgaaaaaacacaccttaattaagatttttggtgaatatatgatgttcaaagtgtccaaccgtgtaagg |
12243128 |
T |
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| Q |
395 |
ctaccaccactcgtggttcaagtcccacatcaagacatcaacccactaagaaactaaaatcaaatcaatcaaattctactaaaag |
479 |
Q |
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| T |
12243129 |
ct---accactcgtggttcaagtcccacatcaagacatcaacccaataagaaactgaaatcaaatcaatcaaattatactaaaag |
12243210 |
T |
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Back To:
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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 298
Target Start/End: Complemental strand, 6945119 - 6945041
Alignment:
| Q |
220 |
aaaatatttcttggaaactaaattagttaccaaacacatagataggattcaaattcctagtaatcatgttccaagaaat |
298 |
Q |
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||||||||||| ||||||||||||| ||||||||||| | |||||||| | ||| |||| ||| |||||||| ||||| |
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| T |
6945119 |
aaaatatttctgggaaactaaattaattaccaaacactttaataggattaagatttctaggaataatgttccaggaaat |
6945041 |
T |
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