View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1808_high_14 (Length: 229)
Name: NF1808_high_14
Description: NF1808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1808_high_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 43831952 - 43832136
Alignment:
| Q |
1 |
ttgatgtttccacttgttcttcaatcaaccaaattcctatatgagaataatcatgatcaaccttcacggagagaagtttctcttcattctcagctaagcc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
43831952 |
ttgatgtttccacttgttcttcattcaaacaaattcctatatgagaataatcatgatcaaccttcacggagagaagtttctcttcatcctcagctaagcc |
43832051 |
T |
|
| Q |
101 |
gttatttaccaactttgtagccatgccaagcaatgagagagaaaagtgatgaacatgtatacaaggtgtcgtacatgttattata |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43832052 |
gttatttaccaactttgtagccatgccaagcaatgagagagaaaagtgatgaacatgtatacaaggtgtcgtacatgttattata |
43832136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 218
Target Start/End: Original strand, 43832149 - 43832184
Alignment:
| Q |
183 |
ataacctaatggaataggaacagatttaccaatatt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
43832149 |
ataacctaatggaataggaacagatttaccaatatt |
43832184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University