View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1808_high_3 (Length: 405)
Name: NF1808_high_3
Description: NF1808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1808_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 20 - 383
Target Start/End: Original strand, 40749467 - 40749831
Alignment:
| Q |
20 |
tgtggtactagagaatataagtgtgattgtggtacactcttctcaaggtaattcaattcacnnnnnnnnn-agtatcaaaaaatttaggtgactttggtt |
118 |
Q |
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| T |
40749467 |
tgtggtactagagaatataagtgtgattgtggtacactcttctcaaggtaattcaattcacttttttttttagtataaaaaaatttaggtgactttggtt |
40749566 |
T |
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| Q |
119 |
tcaaagaccaaagtcatgcaaatttaaacattcaattccttcatactgattttttataaataaagaagtttctgaaaatttattgtttttgatgtggatg |
218 |
Q |
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| T |
40749567 |
tcaaagaccaaagtcatgcaaatttaaacattcaattccttcatactgattttttataaataaagaagtttctgaaaatttcttgtttttgatgtggatg |
40749666 |
T |
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| Q |
219 |
aaaaaactgtttttcttttcaattacttctcatttgcattatgtatgaatttaatgcatacttcctcataatttaattattcacaaattaagacaatgat |
318 |
Q |
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| T |
40749667 |
aaaaaactgtttttcttttcaattacttctcatttgcattatgtatgaatttaatgcatacttcctcataatttaattattcacaaattaagacaatgat |
40749766 |
T |
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| Q |
319 |
ctagtactactgcatagtgtaaatgattaggtttctaatggtacattttatttcacaggaaggat |
383 |
Q |
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| T |
40749767 |
ctagtactactgcatagtgtaaatgattaggtttctaatggtacattttatttcacaggaaggat |
40749831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 31644111 - 31644073
Alignment:
| Q |
16 |
aacctgtggtactagagaatataagtgtgattgtggtac |
54 |
Q |
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| T |
31644111 |
aacctgtggtactcgagaatataaatgtgattgtggtac |
31644073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 42287194 - 42287244
Alignment:
| Q |
20 |
tgtggtactagagaatataagtgtgattgtggtacactcttctcaaggtaa |
70 |
Q |
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| T |
42287194 |
tgtggtactagagaatatagatgtgattgtggcaccctcttctctaggtaa |
42287244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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