View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1808_low_1 (Length: 465)
Name: NF1808_low_1
Description: NF1808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1808_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 16 - 446
Target Start/End: Complemental strand, 18007118 - 18006695
Alignment:
| Q |
16 |
cagtgagggggcggctgtgagctaagctaagctgagtgatgaaaacgaagacccaaagtttagggaactgtgtccatggcccactcacaatattactcta |
115 |
Q |
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| T |
18007118 |
cagtgagggggcggctgtgagctaagctaagctgagtgatgaaaacgaagacccaaagtttagggaactgtgtccatggcccactcacaatattactcta |
18007019 |
T |
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| Q |
116 |
aaccaaa--aactnnnnnnnnnnctagnnnnnnnnatgacttgtgaatgaata---ttgatggtagagtagtagagtttggtgctggttgataatatctg |
210 |
Q |
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| T |
18007018 |
aaccaaaaaaaaaaaaaaaaaaactagttttttt-atgacttgtgaatgaataatattgatggtagagtagtagagtttggtgctggttgttactctctg |
18006920 |
T |
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| Q |
211 |
tatttattgtaaaacctgtttctttttgtctaaccaaaaataaaggtgatnnnnnnngatgattctagagtgtgnnnnnnntagcttcattgagaataca |
310 |
Q |
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| T |
18006919 |
tatttattgtaacacctgtttctttttgtctcaccaaaaaaaaa-----------aagatgattctagagtgtgaaaaaaatagcttcattgagaataca |
18006831 |
T |
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| Q |
311 |
acatttatataagtgggttggtttgggtttcaatagaggaaacatgcccaatttcaacccaacaagtacaacacttctaactagtttacttgtctttctt |
410 |
Q |
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| T |
18006830 |
acatttatataagtgggttggtttgggtttcaatagaggaaacatgcccaatttcaacccaacaagtacaacacttctaactagtttacttgtctttctt |
18006731 |
T |
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| Q |
411 |
cttcatacatatccttcttgccagatcccaaaggta |
446 |
Q |
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| T |
18006730 |
cttcatacatatccttcttgccagatcccaaaggta |
18006695 |
T |
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