View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1808_low_14 (Length: 249)
Name: NF1808_low_14
Description: NF1808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1808_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 50 - 247
Target Start/End: Original strand, 35837868 - 35838061
Alignment:
| Q |
50 |
acattattctatgtatacgaatcttctcatttatatgttgtttcataaccaacatagttacctccttgcattgacaaggggtagcatgcatcttataaat |
149 |
Q |
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| T |
35837868 |
acattatactatatatatgaatcttctcatttatatgttgtttcataaccaacatagttacctccttgcattgacaaggggt--catgcatcttataaat |
35837965 |
T |
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| Q |
150 |
atttgtgttcctaaaagagaagtttcctatgacgttcctcctcttcatcgttatttgcatcttgagcatctctatacgggcatgacaacaatttgtct |
247 |
Q |
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| T |
35837966 |
atttgtgttcctaaaagagaagtttcctatgacgttcctcctcttcatcgttatttgcatcttgagcatctc--tacgggcatgacaacaatttgtct |
35838061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 24859545 - 24859586
Alignment:
| Q |
10 |
attattctgatctggagactgaaatattagattccaaaacac |
51 |
Q |
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| T |
24859545 |
attattctgatctggagactgaaatattagattccaaaacac |
24859586 |
T |
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