View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1808_low_2 (Length: 461)
Name: NF1808_low_2
Description: NF1808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1808_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Original strand, 47159413 - 47159854
Alignment:
| Q |
1 |
catttgatttccaactactaatatatcactgatgcaattccaaacttttgaaaataagagagggtttgtgggtgccgagtttccacgtgcaacacaaaca |
100 |
Q |
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| T |
47159413 |
catttgatttccaaccactaatatatcactaatgcaattccaaacttttgaaaataagagagggtttgtgggtgccaagtttccacgtgcaacacaaaca |
47159512 |
T |
|
| Q |
101 |
ctattgtaagtaacatcattatgaataagtggagttattagtggcaagatccaagatctattgtctatccgcaggacctatgcagaatgttaatgtttgt |
200 |
Q |
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| T |
47159513 |
ctattgtaagtaacatcattatgaataagtggagttattagtggcaagatccaagatctattgtctatccgcaggacctatgcagaatgttaatgtttgt |
47159612 |
T |
|
| Q |
201 |
ttaattaaaggcaaatattatactaccactataccgtataggttttatcttaatatatgtggttactatactatattagcccgataattagccaagtggg |
300 |
Q |
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| T |
47159613 |
ttaattaaaggcaaatattatactactactataccgtgtaggttttatcttaatatatgtggttactatactatattagcccgataattagccaagtggg |
47159712 |
T |
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| Q |
301 |
gttaaggcttaaaactttgcaactagtagtttaattagcatccacgtagggtgtccctaacatgcactcataggatgaaaccattacaaaatattaatgg |
400 |
Q |
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| T |
47159713 |
gttaaggcttaaaattttgcaactagtag-ttaattagcatcgacgtagggtgtccctaacatgcactcataggatgaaaccattacaaaatattaatgg |
47159811 |
T |
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| Q |
401 |
acataacctaggctcgtgtagttcaccaaacattgtatttatt |
443 |
Q |
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| T |
47159812 |
acataacctaggctcgtgtagttcaccaaacattgtatttatt |
47159854 |
T |
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