View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1808_low_6 (Length: 327)
Name: NF1808_low_6
Description: NF1808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1808_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 13 - 313
Target Start/End: Complemental strand, 37849687 - 37849387
Alignment:
| Q |
13 |
tgagaaacaacctcatcagagtttcacatcttcctacatcagaaggtatattgccttgaagttgattgattcccatgtttagcactaacaaatgctttcc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37849687 |
tgagaaacaacctcatcagagtttcacatcttcctacatcagaaggtatattgccttgaagttgattgattcccatgtttagcactagcaaatgctttcc |
37849588 |
T |
|
| Q |
113 |
aaaacaaagatttggtgggatattaccactgaacttgttattcatacagtccaacttcactatgctgctgtttattcccaagctttgaggtatgactcct |
212 |
Q |
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||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37849587 |
aaagcaaatattgggtgggatattaccactgaacttgttattcatacagtccaacttcactatgctgctgtttattcccaagctttgaggtgtgactcct |
37849488 |
T |
|
| Q |
213 |
gagaactgattttcaaacaatgagatattttttagatacttgagctttgtcatctcgaaaggtagttccccggagaggctgttgttgtgaaccaatatgt |
312 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37849487 |
gagaactgattatcaaacaatgagatattttttagatacttgagctttgtcatctcgaaaggtagttccctggagaggctgttgttgtgaaccaatatgt |
37849388 |
T |
|
| Q |
313 |
g |
313 |
Q |
| |
|
| |
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|
| T |
37849387 |
g |
37849387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 20 - 312
Target Start/End: Complemental strand, 37836305 - 37836013
Alignment:
| Q |
20 |
caacctcatcagagtttcacatcttcctacatcagaaggtatattgccttgaagttgattgattcccatgtttagcactaacaaatgctttccaaaacaa |
119 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| || |||||| |||||||||||||||| ||| |
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| T |
37836305 |
caacctcatcagagtttcacatcttcctagatcagaaggtatgccaccttgaagttgattgattcccatattgagcactgacaaatgctttccaaagcaa |
37836206 |
T |
|
| Q |
120 |
agatttggtgggatattaccactgaacttgttattcatacagtccaacttcactatgctgctgtttattcccaagctttgaggtatgactcctgagaact |
219 |
Q |
| |
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||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
37836205 |
agattgggtgggatattaccgctgaacttgttattcataccgtccaacttcactattctgctgttgattcctaagctttgaggtatgactcctgagaact |
37836106 |
T |
|
| Q |
220 |
gattttcaaacaatgagatattttttagatacttgagctttgtcatctcgaaaggtagttccccggagaggctgttgttgtgaaccaatatgt |
312 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||| |
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| T |
37836105 |
gattatcaaacaatgagatattttttagatacttgagctttgtcatctcgaaaggcagttccccagagaggctgttgttgtgaaccaagatgt |
37836013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 13 - 313
Target Start/End: Complemental strand, 37830608 - 37830308
Alignment:
| Q |
13 |
tgagaaacaacctcatcagagtttcacatcttcctacatcagaaggtatattgccttgaagttgattgattcccatgtttagcactaacaaatgctttcc |
112 |
Q |
| |
|
|||||||||||||| | |||||| |||||||||||| |||||||||||| ||||| |||||||||||||||||||| ||| |||||||||||||||| |
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| T |
37830608 |
tgagaaacaacctccttagagttgcacatcttcctagatcagaaggtatgccaccttgtagttgattgattcccatgttgagctctaacaaatgctttcc |
37830509 |
T |
|
| Q |
113 |
aaaacaaagatttggtgggatattaccactgaacttgttattcatacagtccaacttcactatgctgctgtttattcccaagctttgaggtatgactcct |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37830508 |
aaaacaaagatttggtgggatattaccactgaacttgttattcatacagtccaacttcactatgctgctgttgattcccaagctttgaggtatgactcct |
37830409 |
T |
|
| Q |
213 |
gagaactgattttcaaacaatgagatattttttagatacttgagctttgtcatctcgaaaggtagttccccggagaggctgttgttgtgaaccaatatgt |
312 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||| || ||||| || || |||||||||||||| |||| ||||||||||||||| |||| |
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| T |
37830408 |
gagaactgattttcaaacaatgagacattttttagacacttaaggtttgtgatttccaaaggtagttccccaaagagatcgttgttgtgaaccaagatgt |
37830309 |
T |
|
| Q |
313 |
g |
313 |
Q |
| |
|
| |
|
|
| T |
37830308 |
g |
37830308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 13 - 313
Target Start/End: Complemental strand, 37841931 - 37841631
Alignment:
| Q |
13 |
tgagaaacaacctcatcagagtttcacatcttcctacatcagaaggtatattgccttgaagttgattgattcccatgtttagcactaacaaatgctttcc |
112 |
Q |
| |
|
|||||||||||||| | |||||| | |||||||| | |||||||||||| ||||| ||||||||||||||||| || ||| |||||||||||||||| |
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| T |
37841931 |
tgagaaacaacctccttagagttgcgcatcttccaagatcagaaggtatgccaccttgtagttgattgattcccatattgagctctaacaaatgctttcc |
37841832 |
T |
|
| Q |
113 |
aaaacaaagatttggtgggatattaccactgaacttgttattcatacagtccaacttcactatgctgctgtttattcccaagctttgaggtatgactcct |
212 |
Q |
| |
|
||| |||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
37841831 |
aaagcaaagattgggtgggatattgccattgaacttgttattcatacagtccaacttcactatactgctgttgattcccaagctttgaggtatgactcct |
37841732 |
T |
|
| Q |
213 |
gagaactgattttcaaacaatgagatattttttagatacttgagctttgtcatctcgaaaggtagttccccggagaggctgttgttgtgaaccaatatgt |
312 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||| || ||||||||||||||||||||||| |||| |
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| T |
37841731 |
gagaactgattatcaaacaatgagatatttcttagatacttgagctctgtcatctcaaaaggtagttctccagagaggctgttgttgtgaaccaagatgt |
37841632 |
T |
|
| Q |
313 |
g |
313 |
Q |
| |
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| |
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|
| T |
37841631 |
g |
37841631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 157 - 242
Target Start/End: Original strand, 26640749 - 26640834
Alignment:
| Q |
157 |
tacagtccaacttcactatgctgctgtttattcccaagctttgaggtatgactcctgagaactgattttcaaacaatgagatattt |
242 |
Q |
| |
|
||||||| |||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
26640749 |
tacagtctaacttcacaatgctgctgttgattcccaagctttgaggtatgcctcctgagaactgattgtcaaacaatgagatattt |
26640834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 37821587 - 37821519
Alignment:
| Q |
44 |
tcctacatcagaaggtatattgccttgaagttgattgattcccatgtttagcactaacaaatgctttcc |
112 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||| |
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|
| T |
37821587 |
tcctagatcagaaggtatgccaccttgaagttgattgattcccatgttgagctctaacaaatgctttcc |
37821519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 27 - 307
Target Start/End: Complemental strand, 36865054 - 36864782
Alignment:
| Q |
27 |
atcagagtttcacatcttcctacatcagaaggtatattgccttgaagttgattgattcccatgtttagcactaacaaatgctttccaaaacaaagatttg |
126 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| || |||||||||||||| ||||| | ||| || ||||||||||||||||||| |||||||||| |
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|
| T |
36865054 |
atcagagtttcacatcttcctatatcagaaggaatgccaccttgaagttgattaattccgacgttgaggtctaacaaatgctttccaaagcaaagatttg |
36864955 |
T |
|
| Q |
127 |
gtgggatattaccactgaacttgttattcatacagtccaacttcactatgctgctgtttattcccaagctttgaggtatgactcctgagaactgattttc |
226 |
Q |
| |
|
|||||||||||||| | |||||||||||||||| |||||||||||||| | | |||| ||||||||||||||||| |||||||||||||||||||| |
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|
| T |
36864954 |
gtgggatattaccattaaacttgttattcatac-gtccaacttcactaaggtattgttgattcccaagctttgaggaatgactcctgagaactgatt--- |
36864859 |
T |
|
| Q |
227 |
aaacaatgagatattttttagatacttgagctttgtcatctcgaaaggtagttccccggagaggctgttgttgtgaaccaa |
307 |
Q |
| |
|
|||||||||||||||||||| |||| || ||||| ||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
36864858 |
----gatgagatattttttagatacctgaggttcgtcatttcgaaaggtagttccccagagaggctgttgtggtgaaccaa |
36864782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Original strand, 13749459 - 13749491
Alignment:
| Q |
242 |
ttttagatacttgagctttgtcatctcgaaagg |
274 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
|
|
| T |
13749459 |
ttttagatacttgagctttgtcatctccaaagg |
13749491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 177 - 286
Target Start/End: Complemental strand, 45560748 - 45560639
Alignment:
| Q |
177 |
ctgctgtttattcccaagctttgaggtatgactcctgagaactgattttcaaacaatgagatattttttagatacttgagctttgtcatctcgaaaggta |
276 |
Q |
| |
|
||||| || |||||||||||||||||||||||||| |||||| | || |||||||||||||| ||||| || | |||||||| ||||||||| | ||| | |
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|
| T |
45560748 |
ctgctattgattcccaagctttgaggtatgactccagagaacaggttgtcaaacaatgagatgtttttgaggttcttgagctctgtcatctccacaggaa |
45560649 |
T |
|
| Q |
277 |
gttccccgga |
286 |
Q |
| |
|
|||||||||| |
|
|
| T |
45560648 |
gttccccgga |
45560639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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