View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1808_low_7 (Length: 322)
Name: NF1808_low_7
Description: NF1808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1808_low_7 |
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| [»] scaffold0219 (3 HSPs) |
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Alignment Details
Target: scaffold0219 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 10 - 133
Target Start/End: Complemental strand, 10620 - 10497
Alignment:
| Q |
10 |
ataatactatagaatatgtatatataactattttaaacaatatacacaaattgatggttggcatacagtggttaattttgctttgttaattcctcttaac |
109 |
Q |
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| T |
10620 |
ataaaactatagaatatgtatatataactattttaaacaatatacacaaattgatggttggcatacagtggttaattttgctttgttaattcctcttaac |
10521 |
T |
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| Q |
110 |
aagggctcaagtcctccaatgacc |
133 |
Q |
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| T |
10520 |
aagggctcaagtcctccaatgacc |
10497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0219; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 233 - 304
Target Start/End: Complemental strand, 10396 - 10325
Alignment:
| Q |
233 |
attaagcatgtgcctattggataccattttccctatttctattggagtttaacaaggttcaagtcctcaaac |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10396 |
attaagcatgtgcctattggataccattttccctatttctattggagtttaacaaggttcaagtcctcaaac |
10325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0219; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 10449 - 10416
Alignment:
| Q |
181 |
ggtctccaattaacttgaacctgtaacctcatgc |
214 |
Q |
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| T |
10449 |
ggtctccaattaacttgaacctgtaacctcatgc |
10416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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