View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809-Insertion-10 (Length: 616)
Name: NF1809-Insertion-10
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809-Insertion-10 |
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Alignment Details
Target: chr2 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 7 - 612
Target Start/End: Complemental strand, 39004720 - 39004115
Alignment:
| Q |
7 |
acacataaataatgtaaaatttatgggcagggtgaagagctgaagagggcaattggtgcagctgtgtacttagaatgcagctcaaagactcaacaggtta |
106 |
Q |
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| T |
39004720 |
acacataaataatgtaaaatttatgggcagggtgaagagctgaagagggcaattggtgcagctgtgtacttagaatgcagctcaaagactcaacaggtta |
39004621 |
T |
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| Q |
107 |
ttcttttaattcatatatagttataaacttatggttattttaaattaattagaattagnnnnnnngatctaacacaagcacactattaatcttgtactaa |
206 |
Q |
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| T |
39004620 |
ttcttttaattcatatatagttataaacttatggttattttaaattaattagaattagaaaaaaagatctaacacaagcacactattaatcttgtactaa |
39004521 |
T |
|
| Q |
207 |
ttttatgtgtttattgcaatatttcagaatgtgaaggctgtgtttgatgctgcaatcaaggttgttttgcagcctcccaagcaaaagnnnnnnngaagga |
306 |
Q |
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| T |
39004520 |
ttttatgtgtttattgcaatatttcagaatgtgaaggctgtgtttgatgctgcaatcaaggttgttttgcagcctcctaagcaaaagaaaaaaagaaaga |
39004421 |
T |
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| Q |
307 |
agaacagatcatgtattttcctttaatcagtattcatgtttgatgtttgattcacatcctgtgacatttgatttcatggttcagccttttgaacaaatgt |
406 |
Q |
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| T |
39004420 |
agaacagatcatgtattttcctttaatcagtattcatgtttgatgtttgattcacatcctttgacatttgatttcatggttcagccttttgaacaaatgt |
39004321 |
T |
|
| Q |
407 |
attccaaactctactactttctttcagttttcttgtaattttttgttgatgggtccaaatgatgttcccatgttatatgtaactggatattcaaggataa |
506 |
Q |
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| T |
39004320 |
attccaaactctactactttctttcagttttctagtaattttttgttgatgggtccaaatgatgttcctatgttatatgtaactggatattcaaggataa |
39004221 |
T |
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| Q |
507 |
attttgtgataagaaataatagaattaatgttgcacaagatctttgtttttatgaatggtctggagaatttggttggccaccttccacaaagtctctcct |
606 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39004220 |
attttgtgataagaaataatagaattaatgttgcacaagatctttgtttttatgaatggtctggagaatttggttggccaccttccacgaagtctctcct |
39004121 |
T |
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| Q |
607 |
tccaac |
612 |
Q |
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|||||| |
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| T |
39004120 |
tccaac |
39004115 |
T |
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