View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1809-Insertion-11 (Length: 528)

Name: NF1809-Insertion-11
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1809-Insertion-11
NF1809-Insertion-11
[»] chr5 (8 HSPs)
chr5 (15-362)||(23154963-23155310)
chr5 (379-528)||(23154610-23154759)
chr5 (379-487)||(32274282-32274389)
chr5 (379-487)||(18600370-18600478)
chr5 (384-464)||(7222810-7222890)
chr5 (396-485)||(21610067-21610156)
chr5 (396-433)||(28349982-28350019)
chr5 (379-424)||(41048129-41048174)
[»] chr4 (5 HSPs)
chr4 (379-487)||(10122173-10122281)
chr4 (379-487)||(468563-468671)
chr4 (399-485)||(16702880-16702966)
chr4 (379-487)||(16703355-16703462)
chr4 (404-479)||(21241335-21241410)
[»] chr2 (5 HSPs)
chr2 (379-487)||(15731532-15731640)
chr2 (379-487)||(26294652-26294760)
chr2 (401-471)||(34546600-34546670)
chr2 (396-471)||(26178682-26178755)
chr2 (379-437)||(34005984-34006042)
[»] chr7 (2 HSPs)
chr7 (396-487)||(9380414-9380505)
chr7 (396-487)||(9364175-9364266)
[»] chr3 (2 HSPs)
chr3 (379-487)||(53101326-53101434)
chr3 (384-481)||(21767287-21767382)
[»] chr8 (3 HSPs)
chr8 (396-486)||(16947291-16947378)
chr8 (401-487)||(18340513-18340598)
chr8 (394-487)||(9122417-9122516)
[»] chr1 (1 HSPs)
chr1 (379-487)||(7212953-7213061)
[»] chr6 (1 HSPs)
chr6 (398-488)||(2841191-2841281)


Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 15 - 362
Target Start/End: Complemental strand, 23155310 - 23154963
Alignment:
Q  15 ggaatatgatcacaagggtgattttttgagtgtgaaacctaaagttataaatgaaaatatgatgatgagagagaggcacatgatcaaagaaatggaggta 114  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  23155310 ggaatatgatcacaagggtgattttttgagtgtgaaacctaaaattataaatgaaaatatgatgatgagagagaggcacatgatgaaagaaatagaggta 23155211  T
Q  115 taaagtccttatgtatgattacaagaactaagaaatattatttataataaagtatgaaataatttgtaatttaatgattgtattgaaccctattgttgga 214  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  23155210 taaagtccttatatatgattacaagaactaagaaatattatttataataaagtatgaaataatttgtaatttaatagttgtattgaaccctattgttgga 23155111  T
Q  215 attattttgttattaattttcttccttttcaaatatcacataccatgcaagtatggctttgtactctataatgattggtaatgaaataaaatatagccat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  23155110 attattttgttattaattttcttccttttcaaatatcacataccatgcaagtatggctttgtactctataatgattggtaatgaaataaaatatagcaat 23155011  T
Q  315 aagcaatattattaagagtccttgcttctatcctaatttcactgtata 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  23155010 aagcaatattattaagagtccttgcttctatcctaatttcactgtata 23154963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 379 - 528
Target Start/End: Complemental strand, 23154759 - 23154610
Alignment:
Q  379 aaaagtaaattagttatatcattttttactgttatctttaaatttttcttatctatgtgcgtatgcctaagtcaattttatttatgtttgtgatcaactt 478  Q
    |||||||||||||| | || |||||||||||||||||| |||      |||||||||||||| ||||||||||| |||||||| ||||||||||||||||    
T  23154759 aaaagtaaattagtcacattattttttactgttatcttaaaaaaaaaattatctatgtgcgtgtgcctaagtcatttttatttgtgtttgtgatcaactt 23154660  T
Q  479 agactttcttcgccaactatatactgaaatggaaattatttttgtatgtg 528  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  23154659 agactttcttcaccaactatatactgaaatggaaattgtttttgtatgtg 23154610  T

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Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 379 - 487
Target Start/End: Complemental strand, 32274389 - 32274282
Alignment:
Q  379 aaaagtaaattagttatatcattttttactgttatctttaaatttttcttatctatgtgcgtatgcctaagtcaattttatttatgtttgtgatcaactt 478  Q
    |||| ||||||||| | ||||||||||| | |||| ||||||||||||||||||||||| || ||||||||||| |||||||| ||||||||| ||||||    
T  32274389 aaaaataaattagtcacatcattttttatt-ttatttttaaatttttcttatctatgtgtgtgtgcctaagtcatttttatttgtgtttgtgaccaactt 32274291  T
Q  479 agactttct 487  Q
    | |||||||    
T  32274290 aaactttct 32274282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 379 - 487
Target Start/End: Original strand, 18600370 - 18600478
Alignment:
Q  379 aaaagtaaattagttatatcattttttactgttatctttaaatttttcttatctatgtgcgtatgcctaagtcaattttatttatgtttgtgatcaactt 478  Q
    |||| ||||||||| | || |||||||||| || ||||||||||||||| |||||||||  | ||||||| ||| |||||||| ||||||||| ||||||    
T  18600370 aaaactaaattagtcacataattttttacttttgtctttaaatttttctcatctatgtgtatgtgcctaaatcatttttatttgtgtttgtgaccaactt 18600469  T
Q  479 agactttct 487  Q
    |||||||||    
T  18600470 agactttct 18600478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 464
Target Start/End: Complemental strand, 7222890 - 7222810
Alignment:
Q  384 taaattagttatatcattttttactgttatctttaaatttttcttatctatgtgcgtatgcctaagtcaattttatttatg 464  Q
    ||||||| | ||||||| ||||||| |||||||| ||||||||| ||| |||| ||| |||||||||   |||||||||||    
T  7222890 taaattaatcatatcatcttttacttttatcttttaatttttctcatcaatgtacgtgtgcctaagtactttttatttatg 7222810  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 485
Target Start/End: Complemental strand, 21610156 - 21610067
Alignment:
Q  396 atcattttttactgttatctttaaatttttcttatctatgtgcgtatgcctaagtcaattttatttatgtttgtgatcaacttagacttt 485  Q
    ||||||||||||| |||||||| |||||||||  || ||||| ||  ||||||||    ||||| | ||||||||||||||| |||||||    
T  21610156 atcattttttacttttatcttttaatttttctcttccatgtgtgtgcgcctaagtactatttatctgtgtttgtgatcaactaagacttt 21610067  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 433
Target Start/End: Original strand, 28349982 - 28350019
Alignment:
Q  396 atcattttttactgttatctttaaatttttcttatcta 433  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  28349982 atcattttttacttttatcattaaatttttcttatcta 28350019  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 424
Target Start/End: Complemental strand, 41048174 - 41048129
Alignment:
Q  379 aaaagtaaattagttatatcattttttactgttatctttaaatttt 424  Q
    |||| ||||||||| | ||||||||||||| |||||||||||||||    
T  41048174 aaaaataaattagtcacatcattttttacttttatctttaaatttt 41048129  T

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Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 379 - 487
Target Start/End: Complemental strand, 10122281 - 10122173
Alignment:
Q  379 aaaagtaaattagttatatcattttttactgttatctttaaatttttcttatctatgtgcgtatgcctaagtcaattttatttatgtttgtgatcaactt 478  Q
    |||| ||||||||| |||||||||| |||| |||| ||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||| ||||||    
T  10122281 aaaaataaattagtcatatcattttgtacttttatttttaaatttttcttatctatgtgtgtatgcctaagtcatttttatttgtgtttgtgaccaactt 10122182  T
Q  479 agactttct 487  Q
    || ||||||    
T  10122181 aggctttct 10122173  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 379 - 487
Target Start/End: Complemental strand, 468671 - 468563
Alignment:
Q  379 aaaagtaaattagttatatcattttttactgttatctttaaatttttcttatctatgtgcgtatgcctaagtcaattttatttatgtttgtgatcaactt 478  Q
    |||| ||||||||| | |||||| |||||| |||||||||||||||||||||||||||| |  || |||| | | |||||||| ||||||||| ||||||    
T  468671 aaaaataaattagtcacatcattatttacttttatctttaaatttttcttatctatgtgtgcgtgtctaaatgatttttatttgtgtttgtgaccaactt 468572  T
Q  479 agactttct 487  Q
    |||||||||    
T  468571 agactttct 468563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 399 - 485
Target Start/End: Original strand, 16702880 - 16702966
Alignment:
Q  399 attttttactgttatctttaaatttttcttatctatgtgcgtatgcctaagtcaattttatttatgtttgtgatcaacttagacttt 485  Q
    |||||||||| ||||||||||||||||||||| ||||||  | ||||||||||| |||||||| ||||||||| ||| |||||||||    
T  16702880 attttttacttttatctttaaatttttcttatttatgtgtttctgcctaagtcatttttatttgtgtttgtgaccaatttagacttt 16702966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 379 - 487
Target Start/End: Original strand, 16703355 - 16703462
Alignment:
Q  379 aaaagtaaattagttatatcattttttactgttatctttaaatttt-tcttatctatgtgcgtatgcctaagtcaattttatttatgtttgtgatcaact 477  Q
    |||| ||||||||| | ||||||||||||| ||||||||| ||||| || ||| |||||  || ||||||||||| |||||||| | ||||||| |||||    
T  16703355 aaaattaaattagtcacatcattttttacttttatctttacattttgtcatatttatgt--gtgtgcctaagtcatttttatttgtatttgtgaccaact 16703452  T
Q  478 tagactttct 487  Q
    || |||||||    
T  16703453 tatactttct 16703462  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 404 - 479
Target Start/End: Complemental strand, 21241410 - 21241335
Alignment:
Q  404 ttactgttatctttaaatttttcttatctatgtgcgtatgcctaagtcaattttatttatgtttgtgatcaactta 479  Q
    ||||| |||| |||||||||||||||| |||||| ||  || ||||||| |||||||| ||||||||| |||||||    
T  21241410 ttacttttatttttaaatttttcttatttatgtgtgtgcgcttaagtcatttttatttgtgtttgtgaccaactta 21241335  T

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Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 379 - 487
Target Start/End: Complemental strand, 15731640 - 15731532
Alignment:
Q  379 aaaagtaaattagttatatcattttttactgttatctttaaatttttcttatctatgtgcgtatgcctaagtcaattttatttatgtttgtgatcaactt 478  Q
    |||| ||||||||| |  |||||||||||| |||||||||| |||||||||||||||||  | ||||||| ||| |||||||| ||||||||| ||||||    
T  15731640 aaaaataaattagtcacgtcattttttacttttatctttaagtttttcttatctatgtgtatgtgcctaaatcatttttatttgtgtttgtgaccaactt 15731541  T
Q  479 agactttct 487  Q
    ||| |||||    
T  15731540 agattttct 15731532  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 379 - 487
Target Start/End: Original strand, 26294652 - 26294760
Alignment:
Q  379 aaaagtaaattagttatatcattttttactgttatctttaaatttttcttatctatgtgcgtatgcctaagtcaattttatttatgtttgtgatcaactt 478  Q
    |||| ||||||||  | ||||||||||||| ||||||||||||||||||| ||||| |  || ||||||||||| ||||||||||||||||||  |  ||    
T  26294652 aaaaataaattagacacatcattttttacttttatctttaaatttttcttttctatatatgtgtgcctaagtcacttttatttatgtttgtgacaatgtt 26294751  T
Q  479 agactttct 487  Q
    |||||||||    
T  26294752 agactttct 26294760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 401 - 471
Target Start/End: Complemental strand, 34546670 - 34546600
Alignment:
Q  401 tttttactgttatctttaaatttttcttatctatgtgcgtatgcctaagtcaattttatttatgtttgtga 471  Q
    |||||||| ||||||||||||||||||||| |||||  || || |||||||| |||||||||| |||||||    
T  34546670 tttttacttttatctttaaatttttcttatttatgtatgtgtgtctaagtcatttttatttatatttgtga 34546600  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 471
Target Start/End: Complemental strand, 26178755 - 26178682
Alignment:
Q  396 atcattttttactgttatctttaaatttttcttatctatgtgcgtatgcctaagtcaattttatttatgtttgtga 471  Q
    |||||||||||||||||||||||| |||||||||||||| |  ||||| |||| ||| |||| ||||| |||||||    
T  26178755 atcattttttactgttatctttaattttttcttatctatat--gtatgtctaaatcatttttgtttatatttgtga 26178682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 437
Target Start/End: Original strand, 34005984 - 34006042
Alignment:
Q  379 aaaagtaaattagttatatcattttttactgttatctttaaatttttcttatctatgtg 437  Q
    |||| |||| |||| | ||||||||||||| ||| ||||||||||||||||||||||||    
T  34005984 aaaattaaactagtcacatcattttttacttttacctttaaatttttcttatctatgtg 34006042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 396 - 487
Target Start/End: Complemental strand, 9380505 - 9380414
Alignment:
Q  396 atcattttttactgttatctttaaatttttcttatctatgtgcgtatgcctaagtcaattttatttatgtttgtgatcaacttagactttct 487  Q
    ||||||||||||| ||||||||||||||||||||| |||||  |||| ||||||| | |||||||||| ||||||| ||||||| |||||||    
T  9380505 atcattttttacttttatctttaaatttttcttatttatgtatgtattcctaagtaatttttatttatatttgtgaccaacttaaactttct 9380414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 396 - 487
Target Start/End: Complemental strand, 9364266 - 9364175
Alignment:
Q  396 atcattttttactgttatctttaaatttttcttatctatgtgcgtatgcctaagtcaattttatttatgtttgtgatcaacttagactttct 487  Q
    ||||||||||||| ||||||||||||||||||||| |||||  |||   |||||| | |||||||||| ||||||| |||||||||||||||    
T  9364266 atcattttttacttttatctttaaatttttcttatttatgtatgtacttctaagtaatttttatttatatttgtgaccaacttagactttct 9364175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 379 - 487
Target Start/End: Original strand, 53101326 - 53101434
Alignment:
Q  379 aaaagtaaattagttatatcattttttactgttatctttaaatttttcttatctatgtgcgtatgcctaagtcaattttatttatgtttgtgatcaactt 478  Q
    |||| ||||||| ||  ||||| ||||||| |||||||| ||||||||| ||| ||||| ||||||||||||    ||||||| ||||||||| |||||     
T  53101326 aaaaataaattaatttcatcatcttttacttttatcttttaatttttctcatccatgtgtgtatgcctaagtactatttatttgtgtttgtgaccaacta 53101425  T
Q  479 agactttct 487  Q
    |||||||||    
T  53101426 agactttct 53101434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 384 - 481
Target Start/End: Original strand, 21767287 - 21767382
Alignment:
Q  384 taaattagttatatcattttttactgttatctttaaatttttcttatctatgtgcgtatgcctaagtcaattttatttatgtttgtgatcaacttaga 481  Q
    ||||||||| ||||||||||||||| |||||||||| || |||||||||| ||  || || |||||| ||||||  |||||||| ||| |||||||||    
T  21767287 taaattagtcatatcattttttacttttatctttaatttattcttatctaagt--gtgtgtctaagtaaattttgcttatgtttctgaccaacttaga 21767382  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 396 - 486
Target Start/End: Complemental strand, 16947378 - 16947291
Alignment:
Q  396 atcattttttactgttatctttaaatttttcttatctatgtgcgtatgcctaagtcaattttatttatgtttgtgatc-aacttagactttc 486  Q
    ||||||||||||| |||||||||||||||| |||| | ||||    ||||||||||| |||||||| ||||||||| | |||||||||||||    
T  16947378 atcattttttacttttatctttaaatttttattatatgtgtg----tgcctaagtcatttttatttgtgtttgtgaccaaacttagactttc 16947291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 401 - 487
Target Start/End: Original strand, 18340513 - 18340598
Alignment:
Q  401 tttttactgttatctttaaatttttcttatctatgtgcgtatgcctaagtcaattttatttatgtttgtgatcaacttagactttct 487  Q
    |||||||| |||||||||||||||||||||| ||||| |   |||||||||| |||||||| ||||||| | |||||||||| ||||    
T  18340513 tttttact-ttatctttaaatttttcttatcaatgtgtgcgcgcctaagtcatttttatttgtgtttgtcaccaacttagacattct 18340598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 394 - 487
Target Start/End: Complemental strand, 9122516 - 9122417
Alignment:
Q  394 atatcattttttactgttatctttaaatttttcttatctatgtgc------gtatgcctaagtcaattttatttatgtttgtgatcaacttagactttct 487  Q
    |||||||||||||   |||| ||||||||||||||||||||||||      || || |||||||| |||||||| ||||||||| ||||||| |||||||    
T  9122516 atatcattttttatatttatttttaaatttttcttatctatgtgcatatatgtgtgtctaagtcatttttatttgtgtttgtgaccaacttaaactttct 9122417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 379 - 487
Target Start/End: Complemental strand, 7213061 - 7212953
Alignment:
Q  379 aaaagtaaattagttatatcattttttactgttatctttaaatttttcttatctatgtgcgtatgcctaagtcaattttatttatgtttgtgatcaactt 478  Q
    |||| ||||||||| ||||||||||||||| |||||||| ||||||| | |||||||||  ||  |||||||   ||| |||| ||||||||| ||||      
T  7213061 aaaaataaattagtcatatcattttttacttttatcttttaatttttgtcatctatgtgtttacccctaagtagttttgatttgtgtttgtgaccaacca 7212962  T
Q  479 agactttct 487  Q
    |||||||||    
T  7212961 agactttct 7212953  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 398 - 488
Target Start/End: Original strand, 2841191 - 2841281
Alignment:
Q  398 cattttttactgttatctttaaatttttctta-tctatgtgcgtatgcctaagtcaattttatttatgtttgtgatcaacttagactttctt 488  Q
    ||||||||||| |||| ||||||||||||||| |||| ||| || ||||||||   ||||||||||||||||| | ||| ||||||||||||    
T  2841191 cattttttacttttatttttaaatttttcttattcta-gtgtgtgtgcctaagcatattttatttatgtttgtaaccaatttagactttctt 2841281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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