View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1809-Insertion-14 (Length: 473)
Name: NF1809-Insertion-14
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809-Insertion-14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 168; Significance: 5e-90; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 194 - 369
Target Start/End: Original strand, 26492309 - 26492483
Alignment:
| Q |
194 |
ctgcaactaaattgtgaaacataacaggacttactatgtagatgctcaaacagcgttccattcggagcatactcaaaaaccatcatccttgtgaatggct |
293 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26492309 |
ctgcaactaaattgtgaa-cataacaggacttactatgtagatgctcaaacagcgttccattcggagcatactcaaaaaccatcatccttgtgaatggct |
26492407 |
T |
|
| Q |
294 |
tattctcttcacaataaccaataagattcacaaaattcttgtggttcaaccttgataacatctcaatctgaaagac |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26492408 |
tattctcttcacaataaccaataagattcacaaaattcttgtggttcaaccttgataacatctcaatctgaaagac |
26492483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 8 - 191
Target Start/End: Original strand, 26491960 - 26492143
Alignment:
| Q |
8 |
aaaacaatatctaaaagcttagtaaaatttacataatcattttcmattagaattaaatatgtttttcttccctaaaaatatattgctttttgattttggt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
26491960 |
aaaacaatatctaaaagcttagtaaaatttacataatcattttcaattagaattaaatatgtttttgttccctaaaaatatatcgctttttgattttggt |
26492059 |
T |
|
| Q |
108 |
ccttgttattttattttagtccccgtnnnnnnnctcatgttgaaatttgtcattgtaatacgtgtgtaattgcaaatcctgcaa |
191 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26492060 |
ccttgttattttattttagtccccgtaaaaaaattcatgttgaaatttgtcattgtaatacgtgtgtaattgcaaatcctgcaa |
26492143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 400 - 473
Target Start/End: Original strand, 26492514 - 26492587
Alignment:
| Q |
400 |
ccagatcagaaaatgtgtgattcatttgctatatttgttgcctttgaataccttctttcggaactgagcttgca |
473 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26492514 |
ccagatcagaaaatgtgtgattcatttgctatatttgttgcctttgaataccttctttcggaactgagcttgca |
26492587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 351
Target Start/End: Original strand, 32067026 - 32067148
Alignment:
| Q |
229 |
atgtagatgctcaaacagcgttccattcggagcatactcaaaaaccatcatccttgtgaatggcttattctcttcacaataaccaataagattcacaaaa |
328 |
Q |
| |
|
||||| ||| ||||| || |||||||| || ||||| |||||||||| ||| || ||||| |||| | ||||||||| | |||| |||||| || ||| |
|
|
| T |
32067026 |
atgtaaatgttcaaagagtgttccatttggggcatattcaaaaaccaccattctggtgaaaggctcgtcttcttcacaaaatccaagaagatttacgaaa |
32067125 |
T |
|
| Q |
329 |
ttcttgtggttcaaccttgataa |
351 |
Q |
| |
|
||||||||||||| | ||||||| |
|
|
| T |
32067126 |
ttcttgtggttcatctttgataa |
32067148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 226 - 341
Target Start/End: Original strand, 37747769 - 37747884
Alignment:
| Q |
226 |
actatgtagatgctcaaacagcgttccattcggagcatactcaaaaaccatcatccttgtgaatggcttattctcttcacaataaccaataagattcaca |
325 |
Q |
| |
|
|||||||| ||||||||| || |||||||| || ||||| |||||||||| ||| || ||||| |||| | ||||||||||| ||||||||||| ||| |
|
|
| T |
37747769 |
actatgtaaatgctcaaatagtgttccatttggggcatattcaaaaaccaacattctggtgaaaggctcttcttcttcacaatatccaataagattgaca |
37747868 |
T |
|
| Q |
326 |
aaattcttgtggttca |
341 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
37747869 |
aaattcttgtggttca |
37747884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 321
Target Start/End: Original strand, 35832150 - 35832247
Alignment:
| Q |
224 |
ttactatgtagatgctcaaacagcgttccattcggagcatactcaaaaaccatcatccttgtgaatggcttattc-tcttcacaataaccaataagatt |
321 |
Q |
| |
|
|||| |||||||||||| || | ||||||| ||||||||||| || |||||||||||||||||||| || ||| || ||||| |||||||||||||| |
|
|
| T |
35832150 |
ttaccatgtagatgctcgaataagcttccatttggagcatactccaacaccatcatccttgtgaatgg-ttcttcttcgtcacagtaaccaataagatt |
35832247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 130
Target Start/End: Complemental strand, 14947774 - 14947737
Alignment:
| Q |
93 |
ctttttgattttggtccttgttattttattttagtccc |
130 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
14947774 |
ctttttgtttttggtccttgttattttgttttagtccc |
14947737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 130
Target Start/End: Complemental strand, 33062733 - 33062686
Alignment:
| Q |
83 |
aaatatattgctttttgattttggtccttgttattttattttagtccc |
130 |
Q |
| |
|
|||||||| | ||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
33062733 |
aaatatatcgatttttgattttggtccttgttgttttgttttagtccc |
33062686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University