View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809-Insertion-15 (Length: 457)
Name: NF1809-Insertion-15
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809-Insertion-15 |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 8 - 457
Target Start/End: Complemental strand, 47896409 - 47895960
Alignment:
| Q |
8 |
gtctgaatgtccttcattatcagcaccattctgctcaccttcttcaatcttagaactttgtgcacgtgagcgcttccttgtaatgtaatcaatagctttc |
107 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47896409 |
gtctgaatgtccttcattatcagcagcattctgctcaccttcttcaatcttagaactttgtgcacgtgagcgcttccttgtaatgtaatcaatagctttc |
47896310 |
T |
|
| Q |
108 |
tcagtgtgactagactctccactttttcctttgatatgatctgtatggaaattttgcaaactctcattttctatttcctcttaggtttttcctaggaact |
207 |
Q |
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||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
47896309 |
tcagtgtgattggattctccactttttcctttgatatgatctgtatggaaattttgcaaactctcattttctatttcctctgaggtttttcctaggaact |
47896210 |
T |
|
| Q |
208 |
ccttggcctcctcaacctttgggactaactgctgagaatcatctagacctccaccagtcaaacttttcatgttgctgcggtcatctatggataaagagtg |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47896209 |
ccttggcctcctcaacctttgggactaactgctgagaatcatctatacctccaccagtcaaacttttcatgttgctgcggtcatctatggataaagagtg |
47896110 |
T |
|
| Q |
308 |
tccgttattcacctttctaggaatgttatcgcattggaggtgtgctgtatcataagcgtgaagagccattccatcatctatttgtcgttcttgaagagta |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47896109 |
tccgttattcacctttctaggaatgttatcgcattggaggtgtgctgtatcagaagcgtgaagagccattccatcatctatttgtcgttcttgaagagta |
47896010 |
T |
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| Q |
408 |
atcagcggtccttctatattgggagatgatgcgggctctttcactttttc |
457 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47896009 |
attagcggtccttctatattgggagatgatgcgggctctttcactttttc |
47895960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 8 - 457
Target Start/End: Original strand, 31218820 - 31219258
Alignment:
| Q |
8 |
gtctgaatgtccttcattatcagcaccattctgctcaccttcttcaatcttagaactttgtgcacgtgagcgcttccttgtaatgtaatcaatagctttc |
107 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31218820 |
gtctgaatgtccttcattatcagcagcattctgctcaccttcttcaatcttagaactttgtgcacgtgagcgcttccttgtaatgtaatcaatagctttc |
31218919 |
T |
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| Q |
108 |
tcagtgtgactagactctccactttttcctttgatatgatctgtatggaaattttgcaaactctcattttctatttcctcttaggtttttcctaggaact |
207 |
Q |
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||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31218920 |
tcagtgtgattggactctccactttttcctttgatatgatctgtatggaaattttgcaaactctcattttctatttcctctgaggtttttcctaggaact |
31219019 |
T |
|
| Q |
208 |
ccttggcctcctcaacctttgggactaactgctgagaatcatctagacctccaccagtcaaacttttcatgttgctgcggtcatctatggataaagagtg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
31219020 |
ccttggcctcctcaacctttgggactaactgctgagaatcatctagacctccaccagtcaaactttccatgttgttgcggtcatctatggataaagagtg |
31219119 |
T |
|
| Q |
308 |
tccgttattcacctttctaggaatgttatcgcattggaggtgtgctgtatcataagcgtgaagagccattccatcatctatttgtcgttcttgaagagta |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
31219120 |
tccgttattcacctttctaggaatgttatcgcattgga-gtgtgctgtatcagaagcgtgaa----------atcatctatttgtcgttcttgaagagta |
31219208 |
T |
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| Q |
408 |
atcagcggtccttctatattgggagatgatgcgggctctttcactttttc |
457 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31219209 |
atcagcggtccttctatattgggagatgatgcggactctttcactttttc |
31219258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 8 - 457
Target Start/End: Original strand, 31213065 - 31213503
Alignment:
| Q |
8 |
gtctgaatgtccttcattatcagcaccattctgctcaccttcttcaatcttagaactttgtgcacgtgagcgcttccttgtaatgtaatcaatagctttc |
107 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31213065 |
gtctgaatgtccttcattatcagcagcattctgctcaccttcttcaaacttagaactttgtgcacgtgagcgcttccttgtaatgtaatcaatagctttc |
31213164 |
T |
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| Q |
108 |
tcagtgtgactagactctccactttttcctttgatatgatctgtatggaaattttgcaaactctcattttctatttcctcttaggtttttcctaggaact |
207 |
Q |
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||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31213165 |
tcagtgtgaatggaatctccactttttcctttgatatgatctgtatggaaattttgcaaactctcattttctatttcctctgaggtttttcctaggaact |
31213264 |
T |
|
| Q |
208 |
ccttggcctcctcaacctttgggactaactgctgagaatcatctagacctccaccagtcaaacttttcatgttgctgcggtcatctatggataaagagtg |
307 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
31213265 |
ccttggcctcctcaacctttgggactgactgctgagaatcatctagacctccaccagtcaaactttccatgttgttgcggtcatctatggataaagagtg |
31213364 |
T |
|
| Q |
308 |
tccgttattcacctttctaggaatgttatcgcattggaggtgtgctgtatcataagcgtgaagagccattccatcatctatttgtcgttcttgaagagta |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
31213365 |
tccgttattcacctttctaggaatgttatcgcattgga-gtgtgctgtatcagaagcgtgaa----------atcatctatttgtcgttcttgaagagta |
31213453 |
T |
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| Q |
408 |
atcagcggtccttctatattgggagatgatgcgggctctttcactttttc |
457 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31213454 |
atcagcggtccttctatattgggagatgatgcggactctttcactttttc |
31213503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 220 - 436
Target Start/End: Original strand, 4958523 - 4958739
Alignment:
| Q |
220 |
caacctttgggactaactgctgagaatcatctagacctccaccagtcaaacttttcatgttgctgcggtcatctatggataaagagtgtccgttattcac |
319 |
Q |
| |
|
|||||||||||||| |||| |||||||||||| ||||||| |||||||| |||| ||||| |||| | ||||||||||||||||| | | | ||||| | |
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| T |
4958523 |
caacctttgggactgactgttgagaatcatctggacctcccccagtcaagctttccatgtagctgtgttcatctatggataaagaatattcagtattccc |
4958622 |
T |
|
| Q |
320 |
ctttctaggaatgttatcgcattggaggtgtgctgtatcataagcgtgaagagccattccatcatctatttgtcgttcttgaagagtaatcagcggtcct |
419 |
Q |
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|| ||| | |||||||||| |||||||||||||||||||| ||| ||||| ||||| |||||| ||||||||||||||||||||| || | ||||||| |
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| T |
4958623 |
ctctctggcaatgttatcggattggaggtgtgctgtatcagaagagtgaaaagccactccatctgctatttgtcgttcttgaagagcaactatcggtcct |
4958722 |
T |
|
| Q |
420 |
tctatattgggagatga |
436 |
Q |
| |
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|||||||| |||||||| |
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| T |
4958723 |
tctatattaggagatga |
4958739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 4958260 - 4958377
Alignment:
| Q |
8 |
gtctgaatgtccttcattatcagcaccattctgctcaccttcttcaatcttagaactttgtgcacgtgagcgcttccttgtaatgtaatcaatagctttc |
107 |
Q |
| |
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|||||||||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||| |||||||||||| ||| | || |||||||| |
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| T |
4958260 |
gtctgaatgtccttcactatcagcagcattctgctcaccttcagcaatcttagaagtttgtgcacgttgtcgcttccttgtactgttaccagtagctttc |
4958359 |
T |
|
| Q |
108 |
tcagtgtgactagactct |
125 |
Q |
| |
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||||||||||| |||||| |
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|
| T |
4958360 |
tcagtgtgactggactct |
4958377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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