View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1809-Insertion-18 (Length: 383)

Name: NF1809-Insertion-18
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1809-Insertion-18
NF1809-Insertion-18
[»] chr7 (9 HSPs)
chr7 (100-313)||(31952022-31952231)
chr7 (12-117)||(31951905-31952010)
chr7 (52-138)||(31966266-31966352)
chr7 (210-250)||(18819453-18819493)
chr7 (210-247)||(29257833-29257870)
chr7 (208-245)||(34719473-34719510)
chr7 (211-250)||(46896123-46896162)
chr7 (211-245)||(21214434-21214468)
chr7 (209-250)||(32002074-32002115)
[»] chr4 (8 HSPs)
chr4 (314-383)||(46783784-46783853)
chr4 (210-249)||(41709926-41709965)
chr4 (209-245)||(23149859-23149895)
chr4 (209-245)||(28485803-28485839)
chr4 (214-250)||(35419416-35419452)
chr4 (209-242)||(9839134-9839167)
chr4 (209-250)||(29728737-29728778)
chr4 (209-250)||(56446878-56446919)
[»] chr3 (6 HSPs)
chr3 (314-383)||(53240926-53240995)
chr3 (209-243)||(223156-223190)
chr3 (216-250)||(53506231-53506265)
chr3 (209-250)||(10448003-10448044)
chr3 (209-250)||(20494023-20494064)
chr3 (214-250)||(20464596-20464632)
[»] chr6 (2 HSPs)
chr6 (209-250)||(35107990-35108031)
chr6 (209-250)||(19745340-19745381)
[»] chr1 (4 HSPs)
chr1 (209-250)||(9922207-9922248)
chr1 (209-244)||(36343446-36343481)
chr1 (212-250)||(40905824-40905862)
chr1 (209-245)||(27446684-27446720)
[»] chr8 (4 HSPs)
chr8 (209-249)||(31301358-31301398)
chr8 (209-250)||(26413391-26413432)
chr8 (209-250)||(39162258-39162299)
chr8 (210-250)||(36067716-36067756)
[»] chr2 (5 HSPs)
chr2 (210-250)||(15997486-15997526)
chr2 (209-249)||(25997120-25997160)
chr2 (209-250)||(2579092-2579133)
chr2 (209-250)||(26849181-26849222)
chr2 (209-250)||(35962532-35962573)
[»] chr5 (3 HSPs)
chr5 (209-250)||(37993623-37993664)
chr5 (209-245)||(16458441-16458477)
chr5 (209-249)||(20513972-20514012)


Alignment Details
Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 100 - 313
Target Start/End: Original strand, 31952022 - 31952231
Alignment:
Q  100 caaagttggttgatacatatttagttgcttataaatttgtgcgatagtagatagttctccaaaactttaaagaaaatatgtttctttaagaataagctat 199  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  31952022 caaagttggttgatacatatttagttgcttataaatttgtgtgatagtagatagttctccaaaactttaaagaaaatatgtttctttaagaaaaagctat 31952121  T
Q  200 ttgtctctctttttttaatgataaatgttagtatgttaattgttatattagnnnnnnnnnnnnnnnnncatttgtcacgattcaaaccttgtacattaaa 299  Q
      |||||| |||||||||| ||||||||||||||||||||||||||||||                  ||||||||||||||||||||||||||||||||    
T  31952122 acgtctct-tttttttaattataaatgttagtatgttaattgttatatta---atgttttttttttttcatttgtcacgattcaaaccttgtacattaaa 31952217  T
Q  300 ctcctttaatctct 313  Q
    ||||||||||||||    
T  31952218 ctcctttaatctct 31952231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 31951905 - 31952010
Alignment:
Q  12 ggagtcttcatgtctcctaattcaagacacatacttcttaactttctattaatatcattagatgttgcatctctattctaggacctctcaaagttggttg 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31951905 ggagtcttcatgtctcctaattcaagacacatacttcttaactttctattaatatcattagatgttgcatctctatactaggacctctcaaagttggttg 31952004  T
Q  112 atacat 117  Q
    ||||||    
T  31952005 atacat 31952010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 52 - 138
Target Start/End: Original strand, 31966266 - 31966352
Alignment:
Q  52 actttctattaatatcattagatgttgcatctctattctaggacctctcaaagttggttgatacatatttagttgcttataaatttg 138  Q
    |||||||||||| ||||||||||||||||||||  ||||||| ||||||||||||||| || ||||| ||| || ||||||||||||    
T  31966266 actttctattaacatcattagatgttgcatctcgtttctagggcctctcaaagttggtcgacacatacttaattacttataaatttg 31966352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 18819453 - 18819493
Alignment:
Q  210 ttttttaatgataaatgttagtatgttaattgttatattag 250  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  18819453 ttttttaataataaatgttagtatgttaattgttatattag 18819493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 247
Target Start/End: Original strand, 29257833 - 29257870
Alignment:
Q  210 ttttttaatgataaatgttagtatgttaattgttatat 247  Q
    |||||||||||||||||||||||||||| |||||||||    
T  29257833 ttttttaatgataaatgttagtatgttagttgttatat 29257870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 245
Target Start/End: Complemental strand, 34719510 - 34719473
Alignment:
Q  208 ctttttttaatgataaatgttagtatgttaattgttat 245  Q
    |||||||||||||||||||||||||||||| |||||||    
T  34719510 ctttttttaatgataaatgttagtatgttatttgttat 34719473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 46896123 - 46896162
Alignment:
Q  211 tttttaatgataaatgttagtatgttaattgttatattag 250  Q
    |||||||||| |||||||||||||||||||||||| ||||    
T  46896123 tttttaatgacaaatgttagtatgttaattgttattttag 46896162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 245
Target Start/End: Original strand, 21214434 - 21214468
Alignment:
Q  211 tttttaatgataaatgttagtatgttaattgttat 245  Q
    ||||||||||||||| |||||||||||||||||||    
T  21214434 tttttaatgataaattttagtatgttaattgttat 21214468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 32002074 - 32002115
Alignment:
Q  209 tttttttaatgataaatgttagtatgttaattgttatattag 250  Q
    |||||||||||  |||||||||||||||||||||||| ||||    
T  32002074 tttttttaatggcaaatgttagtatgttaattgttatgttag 32002115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 314 - 383
Target Start/End: Complemental strand, 46783853 - 46783784
Alignment:
Q  314 agggaagtaaatatttgtcttctagggaagttggtttgggatttaactcaaaggaataataagctttggg 383  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  46783853 agggaggtaaatacttgtcttctagggaagttggtttgggatttaactcaaagaaataataagctttggg 46783784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 249
Target Start/End: Complemental strand, 41709965 - 41709926
Alignment:
Q  210 ttttttaatgataaatgttagtatgttaattgttatatta 249  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  41709965 ttttttaatgataaatgttagtatgttagttgttatatta 41709926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 23149859 - 23149895
Alignment:
Q  209 tttttttaatgataaatgttagtatgttaattgttat 245  Q
    |||||||||||| ||||||||||||||||||||||||    
T  23149859 tttttttaatgacaaatgttagtatgttaattgttat 23149895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 28485839 - 28485803
Alignment:
Q  209 tttttttaatgataaatgttagtatgttaattgttat 245  Q
    |||||||||||| ||||||||||||||||||||||||    
T  28485839 tttttttaatgacaaatgttagtatgttaattgttat 28485803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 35419416 - 35419452
Alignment:
Q  214 ttaatgataaatgttagtatgttaattgttatattag 250  Q
    ||||||||||||||||||||||||||||||| |||||    
T  35419416 ttaatgataaatgttagtatgttaattgttagattag 35419452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 9839167 - 9839134
Alignment:
Q  209 tttttttaatgataaatgttagtatgttaattgt 242  Q
    ||||||||||||||||||||| ||||||||||||    
T  9839167 tttttttaatgataaatgttaatatgttaattgt 9839134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 29728737 - 29728778
Alignment:
Q  209 tttttttaatgataaatgttagtatgttaattgttatattag 250  Q
    |||||||||||| || ||||||||||||||||||||| ||||    
T  29728737 tttttttaatgacaagtgttagtatgttaattgttatgttag 29728778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 56446878 - 56446919
Alignment:
Q  209 tttttttaatgataaatgttagtatgttaattgttatattag 250  Q
    |||||||||||| |||||||||||||||||||| ||| ||||    
T  56446878 tttttttaatgacaaatgttagtatgttaattgatatgttag 56446919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 314 - 383
Target Start/End: Original strand, 53240926 - 53240995
Alignment:
Q  314 agggaagtaaatatttgtcttctagggaagttggtttgggatttaactcaaaggaataataagctttggg 383  Q
    ||||| ||||||| ||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||    
T  53240926 agggaggtaaatacttgtcttttagggaagttggtttgggatttaactcaaagaaatattaagctttggg 53240995  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 243
Target Start/End: Complemental strand, 223190 - 223156
Alignment:
Q  209 tttttttaatgataaatgttagtatgttaattgtt 243  Q
    |||||||||||||||||||||||||||||||||||    
T  223190 tttttttaatgataaatgttagtatgttaattgtt 223156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 250
Target Start/End: Complemental strand, 53506265 - 53506231
Alignment:
Q  216 aatgataaatgttagtatgttaattgttatattag 250  Q
    |||||||||||||||||||||||||||||| ||||    
T  53506265 aatgataaatgttagtatgttaattgttatgttag 53506231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 10448003 - 10448044
Alignment:
Q  209 tttttttaatgataaatgttagtatgttaattgttatattag 250  Q
    |||||||||||  ||||| |||||||||||||||||||||||    
T  10448003 tttttttaatggcaaatgatagtatgttaattgttatattag 10448044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 20494064 - 20494023
Alignment:
Q  209 tttttttaatgataaatgttagtatgttaattgttatattag 250  Q
    |||||||||||| ||||||||||||||||||| |||| ||||    
T  20494064 tttttttaatgacaaatgttagtatgttaattattatgttag 20494023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 250
Target Start/End: Complemental strand, 20464632 - 20464596
Alignment:
Q  214 ttaatgataaatgttagtatgttaattgttatattag 250  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  20464632 ttaatgataaatgttagtatattaattgttatgttag 20464596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 35108031 - 35107990
Alignment:
Q  209 tttttttaatgataaatgttagtatgttaattgttatattag 250  Q
    |||||||||||| ||||||||||||||||||| |||||||||    
T  35108031 tttttttaatgacaaatgttagtatgttaattattatattag 35107990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 19745381 - 19745340
Alignment:
Q  209 tttttttaatgataaatgttagtatgttaattgttatattag 250  Q
    |||||||||||| || ||||||||||||||||||||| ||||    
T  19745381 tttttttaatgacaattgttagtatgttaattgttatgttag 19745340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 9922248 - 9922207
Alignment:
Q  209 tttttttaatgataaatgttagtatgttaattgttatattag 250  Q
    |||||||||||| |||||||||||||||||||||||| ||||    
T  9922248 tttttttaatgacaaatgttagtatgttaattgttatgttag 9922207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 244
Target Start/End: Complemental strand, 36343481 - 36343446
Alignment:
Q  209 tttttttaatgataaatgttagtatgttaattgtta 244  Q
    ||||||||||| ||||||||||||||||||||||||    
T  36343481 tttttttaatggtaaatgttagtatgttaattgtta 36343446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 250
Target Start/End: Complemental strand, 40905862 - 40905824
Alignment:
Q  212 ttttaatgataaatgttagtatgttaattgttatattag 250  Q
    ||||||||| |||||||||||||||||||||||| ||||    
T  40905862 ttttaatgacaaatgttagtatgttaattgttatgttag 40905824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 27446720 - 27446684
Alignment:
Q  209 tttttttaatgataaatgttagtatgttaattgttat 245  Q
    |||||||||||| |||||||||||||||| |||||||    
T  27446720 tttttttaatgacaaatgttagtatgttatttgttat 27446684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 31301358 - 31301398
Alignment:
Q  209 tttttttaatgataaatgttagtatgttaattgttatatta 249  Q
    |||||||||||| |||||||||||| |||||||||||||||    
T  31301358 tttttttaatgaaaaatgttagtatattaattgttatatta 31301398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 26413391 - 26413432
Alignment:
Q  209 tttttttaatgataaatgttagtatgttaattgttatattag 250  Q
    |||||| ||||| |||||||||||||||||||||||| ||||    
T  26413391 ttttttgaatgacaaatgttagtatgttaattgttatgttag 26413432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 39162299 - 39162258
Alignment:
Q  209 tttttttaatgataaatgttagtatgttaattgttatattag 250  Q
    |||||||||||  |||||||||||||||||||||||| ||||    
T  39162299 tttttttaatggcaaatgttagtatgttaattgttatgttag 39162258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 250
Target Start/End: Complemental strand, 36067756 - 36067716
Alignment:
Q  210 ttttttaatgataaatgttagtatgttaattgttatattag 250  Q
    ||||| ||||||||||||||||  |||||||||||||||||    
T  36067756 tttttaaatgataaatgttagtgggttaattgttatattag 36067716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 250
Target Start/End: Complemental strand, 15997526 - 15997486
Alignment:
Q  210 ttttttaatgataaatgttagtatgttaattgttatattag 250  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  15997526 ttttttaatgaaaaatgttagtatgttaattgttatgttag 15997486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 25997120 - 25997160
Alignment:
Q  209 tttttttaatgataaatgttagtatgttaattgttatatta 249  Q
    |||||||||||  ||||||||||||||||||||||||||||    
T  25997120 tttttttaatgtaaaatgttagtatgttaattgttatatta 25997160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 2579133 - 2579092
Alignment:
Q  209 tttttttaatgataaatgttagtatgttaattgttatattag 250  Q
    |||||| ||||||||||||||||||| |||||||||| ||||    
T  2579133 ttttttcaatgataaatgttagtatgctaattgttatgttag 2579092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 26849181 - 26849222
Alignment:
Q  209 tttttttaatgataaatgttagtatgttaattgttatattag 250  Q
    |||||||||||  |||| ||||||||||||||||||||||||    
T  26849181 tttttttaatggcaaatattagtatgttaattgttatattag 26849222  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 35962532 - 35962573
Alignment:
Q  209 tttttttaatgataaatgttagtatgttaattgttatattag 250  Q
    |||||||||||| | || ||||||||||||||||||||||||    
T  35962532 tttttttaatgacagatattagtatgttaattgttatattag 35962573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 37993664 - 37993623
Alignment:
Q  209 tttttttaatgataaatgttagtatgttaattgttatattag 250  Q
    ||||||||| || |||||||||||||||||||||||| ||||    
T  37993664 tttttttaacgacaaatgttagtatgttaattgttatgttag 37993623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 16458477 - 16458441
Alignment:
Q  209 tttttttaatgataaatgttagtatgttaattgttat 245  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  16458477 tttttttaatgacaaatgttggtatgttaattgttat 16458441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 20513972 - 20514012
Alignment:
Q  209 tttttttaatgataaatgttagtatgttaattgttatatta 249  Q
    ||||||| ||| |||||||| ||||||||||||||||||||    
T  20513972 ttttttttatggtaaatgtttgtatgttaattgttatatta 20514012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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