View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1809-Insertion-19 (Length: 391)

Name: NF1809-Insertion-19
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1809-Insertion-19
NF1809-Insertion-19
[»] chr1 (1 HSPs)
chr1 (1-391)||(11592714-11593104)


Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 11593104 - 11592714
Alignment:
Q  1 cccctgacccaacaagaagcattcttccagccagggcagtgataaagtctatagatagaatcaaagggccttttgaccctgccaatatagagtatctgca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11593104 cccctgacccaacaagaagcattcttccagccagggcagtgataaagtctatagatagaatcaaagggccttttgaccctgccaatatagagtatctgca 11593005  T
Q  101 gaaggatgtgccatgggaagaattcaagacaaatcttctttctagctaatgacagtgtagttagcttcttaaannnnnnncaataattttttctctgtga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||       ||||||||||||||||||||    
T  11593004 gaaggatgtgccatgggaagaattcaagacaaatcttctttctagctaaagacagtgtagttagcttcttaaatttttttcaataattttttctctgtga 11592905  T
Q  201 tttaatttgtatactttgtcgccgtaacaaattttatattgtcaaacaaatacaaccgtgagatcattaaaaatgttcgactttaattataacaacttta 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  11592904 tttaatttgtatactttgtcgccgtaacaaattttatattgtcaaacaaatataaccttgagatcattaaaaatgttcgactttaattataacaacttta 11592805  T
Q  301 aatatcgcatctatgctgatttctgattgattgactaagaaaattctgacattgaaaatttgtcaaaatcaaactcttttctttgtggttc 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11592804 aatatcgcatctatgctgatttctgattgattgactaagaaaattctgacattgaaaatttgtcaaaatcaaactcttttctttgtggttc 11592714  T

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