View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809-Insertion-2 (Length: 814)
Name: NF1809-Insertion-2
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809-Insertion-2 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 758; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 758; E-Value: 0
Query Start/End: Original strand, 8 - 814
Target Start/End: Original strand, 33835193 - 33835999
Alignment:
| Q |
8 |
aaattctgatagtaatcttgatacagaatggtaagcaggatcttctgtactttctacaactaaaataaattctagaggaccaccatatagagatgttaac |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33835193 |
aaattctgatagtaatcttgatacagaatggtaagcaggatcttctgtactttctacaactaaaataaattctagaggaccaccatatagagatgttaac |
33835292 |
T |
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| Q |
108 |
tgcataaaaaatcaaacattgttatgnnnnnnnctgatatttttgctgaagaattcatacaatatttaatgttatagtgctgtgtgtcctatacctgagt |
207 |
Q |
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| T |
33835293 |
tgcataaaaaatcaaacattgttatgtttttttctgatatttttgctgaagaattcatacaatatttaatgttatagtggtgtgtgtcctatacctgagt |
33835392 |
T |
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| Q |
208 |
cctccaattatggagattgtgttcaccaaacccctttagaggcataattactgttacttttggcaaattgacctgattggaatgctcaagttcattgata |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33835393 |
cctccaattatggagattgtgttcaccaaacccctttagaggcataattactgttacttttggcaaattgacctgattgcaatgctcaagttcattgata |
33835492 |
T |
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| Q |
308 |
tcatgacatataaaagcaaagctatttccattctgtatactcctccttattcttcttatctctcttttcctgtaacattaaaatgatgcaaatatgttat |
407 |
Q |
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| T |
33835493 |
tcatgacatataaaagcaaagctatttccattctgtatactcctccttattcttcttatctctcttttcctgtaacattaaaatgatgcaaatatgttat |
33835592 |
T |
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| Q |
408 |
ggacacaacaaataagagtttctttactttgtttgatattaatgcgctatgtaacaccaacacctcggatttagggaatatccgtcatgtgtcggtgttt |
507 |
Q |
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| T |
33835593 |
ggacacaacaaataagagtttctttactttgtttgatattaatgcgctatgtaacaccaacacctcggatttagggaatgtccgtcatgtgtcggtgttt |
33835692 |
T |
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| Q |
508 |
aatgtcgacatatgtggttacatccaatcacttttgtcttcttaaactattatggtgtctagtgttgtgtatggtgtatgtatttgtgtctgtgtcagtg |
607 |
Q |
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| T |
33835693 |
aatgtcgacatatgtggttacatccaatcacttttgtcttcttaaactattatggtgtctagtgtcgtgtatggtgtatgtatttgtgtctgtgtcagtg |
33835792 |
T |
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| Q |
608 |
cttcataatcaatgagtacctgacacatgcagctgaagcccacccaaaagctaagactaagcaaatgatacatccctgcacattgaacataaaattcaga |
707 |
Q |
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| T |
33835793 |
cttcataatcaatgagtacctgacacatgcagctgaagcccacccaaaagctaagactaagcaaatgatacatccctgcacattgaacataaaattcaga |
33835892 |
T |
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| Q |
708 |
ttatggggacaaacacattaagttttgagtaactacacaaatggaattagacatcgcatcgtaacctgatatgttaatacattagatatataaatccttt |
807 |
Q |
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| T |
33835893 |
ttatggggacaaacacattaagttttgagcaactacacaaatggaattagacatcgcatcgtaacctaatatgttaatacattagatatataaatcattt |
33835992 |
T |
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| Q |
808 |
cactgta |
814 |
Q |
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| T |
33835993 |
cactgta |
33835999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 43154454 - 43154350
Alignment:
| Q |
8 |
aaattctgatagtaatcttgatacagaatggtaagcaggatcttctgtactttctacaactaaaataaattctagaggaccaccatatagagatgttaac |
107 |
Q |
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||||||||||| || || ||||| || ||||||||||||||| ||||| |||||||| || |||| |||||||||||| || ||||| |||||||||| | |
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| T |
43154454 |
aaattctgatattagtcgtgatatagcatggtaagcaggatcctctgtgctttctaccacaaaaagaaattctagagggccgccataaagagatgttatc |
43154355 |
T |
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| Q |
108 |
tgcat |
112 |
Q |
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| T |
43154354 |
tgcat |
43154350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 199 - 342
Target Start/End: Complemental strand, 43153927 - 43153784
Alignment:
| Q |
199 |
tacctgagtcctccaattatggagattgtgttcaccaaacccctttagaggcataattactgttacttttggcaaattgacctgattggaatgctcaagt |
298 |
Q |
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||||||| ||||||| || |||||||||||||| |||||||| || || ||||| | |||||||||| |||| | |||| |||||| | | |||||||| |
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| T |
43153927 |
tacctgactcctccagttgtggagattgtgttctccaaaccctttcaggggcatgactactgttactcttggaagattggcctgatagaagtgctcaagc |
43153828 |
T |
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| Q |
299 |
tcattgatatcatgacatataaaagcaaagctatttccattctg |
342 |
Q |
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| T |
43153827 |
tcatttatgtcatgacataggaaagaaagactattgccattctg |
43153784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 43142476 - 43142379
Alignment:
| Q |
8 |
aaattctgatagtaatcttgatacagaatggtaagcaggatcttctgtactttctacaactaaaataaattctagaggaccaccatatagagatgtta |
105 |
Q |
| |
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||||||||||| || || ||||| || ||||||||| ||||| ||||| ||||||| || ||||||||||||| ||| || ||||| |||| ||||| |
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| T |
43142476 |
aaattctgatattagtcgtgatataggatggtaagccggatcctctgtgctttctaacacgaaaataaattctatagggccgccataaagagttgtta |
43142379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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