View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809-Insertion-20 (Length: 334)
Name: NF1809-Insertion-20
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809-Insertion-20 |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 16 - 172
Target Start/End: Complemental strand, 42313895 - 42313739
Alignment:
| Q |
16 |
tggcgcctctatttcaaattcaaatttcaaatcttcctccaacccataagcattaattacccgcatattcccaacaaagcattccaccatcttcaacatt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
42313895 |
tggcgcctctatttcaaattcaaatttcaaatcttcctgcaacccataagcattaattaccggcatattcccaacaaagcattccaccgtcttcaacatt |
42313796 |
T |
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| Q |
116 |
ggaaaaagaaagcatgggtattggtaacatgttgtgaactacacttttccatcaaac |
172 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42313795 |
ggaacaagaaagcatgggtattggtaacatgtcgtgaactacacttttccatcaaac |
42313739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 42313658 - 42313575
Alignment:
| Q |
247 |
acaatcccatttcacatttttattaacttagccttcatcccctttcgggtctctcttctctcttgcaccctttcaacaccaaac |
330 |
Q |
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| T |
42313658 |
acaatcccatttcacatttttattaacttagccttcatcccctttccggtctctcttctctcttgcaccctttcaacaccaaac |
42313575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 129; Significance: 1e-66; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 16 - 172
Target Start/End: Complemental strand, 20910644 - 20910488
Alignment:
| Q |
16 |
tggcgcctctatttcaaattcaaatttcaaatcttcctccaacccataagcattaattacccgcatattcccaacaaagcattccaccatcttcaacatt |
115 |
Q |
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||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||| |
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| T |
20910644 |
tggcgcccctatttcaaatttaaatttcaaatcttcctccaacccataagcattaattaccggcatatttccaacaaagcattccaccgtcttcaacatt |
20910545 |
T |
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| Q |
116 |
ggaaaaagaaagcatgggtattggtaacatgttgtgaactacacttttccatcaaac |
172 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
20910544 |
ggaacaagaaagcatgggtattggtaacatgttatgaactacacttttccatcaaac |
20910488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 16 - 172
Target Start/End: Complemental strand, 20925092 - 20924936
Alignment:
| Q |
16 |
tggcgcctctatttcaaattcaaatttcaaatcttcctccaacccataagcattaattacccgcatattcccaacaaagcattccaccatcttcaacatt |
115 |
Q |
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||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||| |
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| T |
20925092 |
tggcgcccctatttcaaatttaaatttcaaatcttcctccaacccataagcattaattaccggcatatttccaacaaagcattccaccgtcttcaacatt |
20924993 |
T |
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| Q |
116 |
ggaaaaagaaagcatgggtattggtaacatgttgtgaactacacttttccatcaaac |
172 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
20924992 |
ggaacaagaaagcatgggtattggtaacatgttatgaactacacttttccatcaaac |
20924936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 20910413 - 20910330
Alignment:
| Q |
247 |
acaatcccatttcacatttttattaacttagccttcatcccctttcgggtctctcttctctcttgcaccctttcaacaccaaac |
330 |
Q |
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||||||||||||||||||||||||| ||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
20910413 |
acaatcccatttcacatttttattatcttttccttcatcccttttccggtctctcttctctcttgcaccctttcaacaccaaac |
20910330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 20924861 - 20924778
Alignment:
| Q |
247 |
acaatcccatttcacatttttattaacttagccttcatcccctttcgggtctctcttctctcttgcaccctttcaacaccaaac |
330 |
Q |
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||||||||||||||||||||||||| ||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
20924861 |
acaatcccatttcacatttttattatcttttccttcatcccttttccggtctctcttctctcttgcaccctttcaacaccaaac |
20924778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 41327306 - 41327223
Alignment:
| Q |
247 |
acaatcccatttcacatttttattaacttagccttcatcccctttcgggtctctcttctctcttgcaccctttcaacaccaaac |
330 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41327306 |
acaatcccatttcacatttttattaactttgccttcatcccctttccggtctctcttctctcttgcaccctttcaacaccaaac |
41327223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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