View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809-Insertion-22 (Length: 299)
Name: NF1809-Insertion-22
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809-Insertion-22 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 35 - 299
Target Start/End: Complemental strand, 43133887 - 43133623
Alignment:
| Q |
35 |
acctgggaatcgaactcagcttcctgggtaaaaaatagatgaaatatttggtactgtaaatnnnnnnnncaagagcaatattcactcatggagaggaggt |
134 |
Q |
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| T |
43133887 |
acctgggaatcgaactcatcttcctgggtaaaaaatagatgaaatatttggtaccgtaaataaaaaaaacaagagcaatattcactcatggagaggaggt |
43133788 |
T |
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| Q |
135 |
ttgtttagtaatttttggaaattcttgaagatttgaaattgttcgtcaaatgcacacacattgatatcggcccaacttagattgaggtccaaagtaaaat |
234 |
Q |
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| T |
43133787 |
ttctttagtaatttttggaaattcttgaagatttgaaattgttcgtcaaacacacacacattgatatcggcccaacttagattgaggtccaaagtaaact |
43133688 |
T |
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| Q |
235 |
aaaagtgaaaccttttaaatataggaagacctttacttttctcaccctacttatcgcacgccata |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
43133687 |
aaaagtgaaaccttttaaatataggaagacctttacttttctcaccctacttattgcacgccata |
43133623 |
T |
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