View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809-Insertion-25 (Length: 217)
Name: NF1809-Insertion-25
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809-Insertion-25 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 217
Target Start/End: Original strand, 43555135 - 43555344
Alignment:
| Q |
8 |
ccatgttttcattctcagcagaaaccaagtcagggcataatctaacaatctcagacaccatttcaatgcaaccatacttggaagctaggtgtaatggagt |
107 |
Q |
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| T |
43555135 |
ccatgttttcattctcagcagaaaccatgtcagggcataatctaacaatctcagacaccatttcaatgcaaccatacttggaagctaggtgtaatggagt |
43555234 |
T |
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| Q |
108 |
gttgaaggtatcactagttctctggttgagaattccttctctttctttcattatgcttgaaaatgtggaaatgtcattattcttaattgcattaaaaaac |
207 |
Q |
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| T |
43555235 |
gttgaaggtatcatcagttctctggttgagaattccttctcttactttcactatgcttgaaaatgtggaaatgtcattattcttaattgcattaaaaaac |
43555334 |
T |
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| Q |
208 |
tcttgatcca |
217 |
Q |
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|||||||||| |
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| T |
43555335 |
tcttgatcca |
43555344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 8 - 217
Target Start/End: Original strand, 43550819 - 43551028
Alignment:
| Q |
8 |
ccatgttttcattctcagcagaaaccaagtcagggcataatctaacaatctcagacaccatttcaatgcaaccatacttggaagctaggtgtaatggagt |
107 |
Q |
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||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43550819 |
ccatgtttttattctcagcagaaaccatgtcagggcataatttaacaatctcagacaccatttcaatgcaaccatacttggaagcaaggtgtaatggagc |
43550918 |
T |
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| Q |
108 |
gttgaaggtatcactagttctctggttgagaattccttctctttctttcattatgcttgaaaatgtggaaatgtcattattcttaattgcattaaaaaac |
207 |
Q |
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| T |
43550919 |
gctgaaggtatcatctgttttctggttaagaattccttctctttctttcactatgcttgaaaatgtgatcatgtcatttttcttaattgcatcgaaaaac |
43551018 |
T |
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| Q |
208 |
tcttgatcca |
217 |
Q |
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| T |
43551019 |
tcttgatcca |
43551028 |
T |
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