View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809-Insertion-27 (Length: 179)
Name: NF1809-Insertion-27
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809-Insertion-27 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 6e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 6e-82
Query Start/End: Original strand, 7 - 179
Target Start/End: Original strand, 30698419 - 30698594
Alignment:
| Q |
7 |
acacacaaaattagaaacatttatttagtagatggtttctgtacatggttggtggtattaatt---tattacgtcacactaaacacccagcggcaatgat |
103 |
Q |
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| T |
30698419 |
acacacaaaattagaaacatttatttagtagatggtttctgtacatggttggtggtattaattcattattacgtcacactaaacacccagcagcaatgat |
30698518 |
T |
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| Q |
104 |
tcaaagacatgctgaagtgtttggtgcgttatatttttcatgatctcagctctatattttgacgtcagtttttgct |
179 |
Q |
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| T |
30698519 |
tcaaagacatgctgaagtgtttagtgcgttatatttttcatgatctcagctctatattttgacgtcagtttttgct |
30698594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 8e-29
Query Start/End: Original strand, 69 - 176
Target Start/End: Original strand, 28503605 - 28503710
Alignment:
| Q |
69 |
ttattacgtcacactaaacacccagcggcaatgattcaaagacatgctgaagtgtttggtgcgttatatttttcatgatctcagctctatattttgacgt |
168 |
Q |
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||||| ||||| | ||| |||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
28503605 |
ttattgcgtcagagtaagcacccagcagcaatgattgaaagacatgctgaagtgtttggtg--ttatatttttcatgatctttgctctatattttgacgt |
28503702 |
T |
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| Q |
169 |
cagttttt |
176 |
Q |
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| T |
28503703 |
cagttttt |
28503710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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