View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1809-Insertion-3 (Length: 885)
Name: NF1809-Insertion-3
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809-Insertion-3 |
 | |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 841; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 841; E-Value: 0
Query Start/End: Original strand, 8 - 885
Target Start/End: Original strand, 35993020 - 35993899
Alignment:
| Q |
8 |
caagtgtgatatatttgtgctgctgttaaggaatgatagagcaaatctctattagcagaacgaagtagaaagcttggacatgcatgcttctggtttgcca |
107 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35993020 |
caagtgtgatatattcgtgctgctgttaaggaatgatagagcaaatctctattagcagaacgaagtagaaagcttggacatgcatgcttctggtttgcca |
35993119 |
T |
|
| Q |
108 |
aaggagatttgccctgccatttttgacagcttttgattaagactaacacatcatattaattactttctttttgttttccatttccggtccgtgacacgcg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35993120 |
aaggagatttgccctgccatttttgacagcttttgattaagactaacacatcatattaattactttctttttgttttccatttccggtccgtgacacgcg |
35993219 |
T |
|
| Q |
208 |
--tcccttacttgtggcatccagatataattaacttcatttagtttctttctactttgttactaatggctttcccttcatgacattgcacatagatattt |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35993220 |
cgtcccttacttgtggcatccagatataattaacttcatttagtttctttctactttgttactaatggctttcccttcatgacattgcacatagatattt |
35993319 |
T |
|
| Q |
306 |
tgaagattgtgtgtcatatgcagactgaagagccaaaagattgtccaacgaagccataagaagaatgcactatattgaaatttcagtgttgaagttaacc |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
35993320 |
tgaagattgtgtgtcatatgcagactgaagagccaaaagattgtccaacgaagccataagaagaatgcactatattgaaatttcagtgatgaagttaacc |
35993419 |
T |
|
| Q |
406 |
aaaacactgaagctttatctagcaattagaatttctataatgtactgtttattagtgagcaatcctgcacaaatcttactctttccttttaataaagaat |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35993420 |
aaaacactgaagctttatctagcaattagaatttctataatgtactgtttattagtgagcaatcctgcacaaatcttactctttccttttaataaagaat |
35993519 |
T |
|
| Q |
506 |
tatagctttatcaaacaagagtttctgcataaactatggatatacttttatactagacgtctgtatctctggaacttaattacttgttggtgtacttaat |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35993520 |
tatagctttatcaaacaagagtttctgcataaactatggatatatttttatactagacgtctgtatctctggaacttaattacttgttggtgtacttaat |
35993619 |
T |
|
| Q |
606 |
aaatacatccaaacagtgactgaattatacaattataattttttaagaacttgataatgaatctaatttcagagcaaatgatgtaatatttaaaacatta |
705 |
Q |
| |
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||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35993620 |
aaatacatccaaacactgattgaattatacaattataattttttaagaacttgataatgaatctaatttcagagcaaatgatgtaatatttaaaacatta |
35993719 |
T |
|
| Q |
706 |
gtctactgacaaagatatgctgaagataataagcaaagtctattacgataagcggacaatatttagaacatcagtccattaacgaaatatttacaataca |
805 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
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|
| T |
35993720 |
gtctactgacaaagatatgctgaagataataagcaaagtctattacgataagcggacaatatttagaacattagtccattaacaaaatatttacaataca |
35993819 |
T |
|
| Q |
806 |
ttttcacctaaaatcttaaaacaatctgtataaatctaagtcaacaattatgcgactgtttaaatttttcacttaactcg |
885 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35993820 |
ttttcacctaaaatcttaaaacaatctgtataaatctaagtcaacaattatgcgactgtttaaatttttcacttaactcg |
35993899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 9 - 884
Target Start/End: Original strand, 35997787 - 35998674
Alignment:
| Q |
9 |
aagtgtgatatatttgtgctgctgttaaggaatgatagagcaaatctctattagcagaacgaagtagaaagcttggacatgcatgcttctggtttgccaa |
108 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35997787 |
aagtgtcatatatttgtgctgctgttgaggaatgatagagcaaatctctattggcagaacgaagtagaaagcttggacatgcatgcttctggtttgccaa |
35997886 |
T |
|
| Q |
109 |
aggagatttgccctgccatttttgacagcttttgattaagactaacacatcatattaattactttctttttgttttccatttccggtccgtgacacgcgt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| | |
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|
| T |
35997887 |
aggagatttgccctgccatttttgacagcttttgattaagactaacacatcatattaattactttctttttgttttccatagtcggtccatgacacgtct |
35997986 |
T |
|
| Q |
209 |
cccttacttgtggcatccagatataattaacttcatttagtttctttctacttt------gttactaatggctttcccttcatgacattgcacatagata |
302 |
Q |
| |
|
||| ||||||||| || | |||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||| |
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|
| T |
35997987 |
cccatacttgtggtatgctgatataattatcttcatttagtttctttctactttctttttgttactaatggctttcctttcatgacattgcagatagata |
35998086 |
T |
|
| Q |
303 |
ttttgaagattgt-------gtgtcatatgcagactgaagagccaaaagattgtccaacgaagccataagaagaatgcactatattgaaatttcagtgtt |
395 |
Q |
| |
|
|| || ||||||| || ||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || | | | |
|
|
| T |
35998087 |
ttgtgcagattgttaattgtgtatcacatggagactgaagagccaaaagattgtccaatgaagccataagaagaatgcactatattgtgatg--atcgat |
35998184 |
T |
|
| Q |
396 |
gaagttaaccaaaacactgaagctttatctagcaattagaatttctataatgtactgtttattagtgagcaatcctgcacaaatcttactctttcctttt |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||| |||||||| ||||||||||| |
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|
| T |
35998185 |
gaagttaaccaaaacactgaagctttatctagcaattagaatttctataatgtactatttattagtgagcattactgcagaaatcttattctttcctttt |
35998284 |
T |
|
| Q |
496 |
aataaagaattatagctttatcaaacaagagtttctgcataaactatggatatacttttatactagacgtctgtatctctggaacttaattacttgttgg |
595 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
35998285 |
aataaagaattctagctttatcaaacaagagtttctgcataaactatggatatacttttataccagatgtctgcatctctggaacttaattacttgttgg |
35998384 |
T |
|
| Q |
596 |
tgtacttaataaatacatccaaacagtgactgaattatacaattataattttttaagaacttgataatgaatctaatttcagagcaaatgatgt-aatat |
694 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||| ||||| |||| |
|
|
| T |
35998385 |
tgtacttaataaatacatccaaacactgactgaattatataattataattttttaagcacttgataatgaatctaatttcagagaaaaggatgtaaatag |
35998484 |
T |
|
| Q |
695 |
ttaaaacattagtctactgacaaagatatgctgaagataataagcaaagtctattacgataagcggacaatatttagaacatcagtccattaacgaaata |
794 |
Q |
| |
|
||| ||||||||| |||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||| |
|
|
| T |
35998485 |
ttagaacattagtacactgacaaagatttgatgaaaataataagcaaagtctattacgataagcggacaatatttagaacattagtcaattaacaaaata |
35998584 |
T |
|
| Q |
795 |
tttacaatacattttcacctaaaatcttaaaacaatctgtataaatctaagtcaacaattatgcgactgtttaaatttttcacttaactc |
884 |
Q |
| |
|
||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
35998585 |
tttacaagacattttcacacaaaatcttataacaatctgtataaatctaagtcaacaattatgcgactctttagatttttcacttaactc |
35998674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 19 - 345
Target Start/End: Original strand, 35982386 - 35982723
Alignment:
| Q |
19 |
tatttgtgctgctgttaaggaatgatagagcaaatctctattagcagaacgaagtagaaagcttggacatgcatgcttctggtttgccaaaggagatttg |
118 |
Q |
| |
|
||||||| |||||||| ||||||||||| | |||||||| || ||||| | |||| ||| ||| ||| | ||| |||||||||||||||||||||||| |
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|
| T |
35982386 |
tatttgttctgctgttgaggaatgatagggaaaatctcttttggcagagaggagtaaaaatcttaaacaggaatgtttctggtttgccaaaggagatttg |
35982485 |
T |
|
| Q |
119 |
ccctgccatttttgacagcttttgattaagactaacacatcatattaattactttctttttgttttccatttccggtccgtgacacgcgtcccttacttg |
218 |
Q |
| |
|
|||||||||||||||||||| ||| |||| | ||||| |||| ||| ||||| ||||||||||||||| | | || | || || || | | |||| |
|
|
| T |
35982486 |
ccctgccatttttgacagctattggttaacaataacaattcatgttatttactcactttttgttttccatcttctatcggcgaaacaagttcgattcttg |
35982585 |
T |
|
| Q |
219 |
tggcatccagata----taattaacttcatttagtttctttctactttgttactaatggctttcccttcatgacattgcacatagatattttgaag---- |
310 |
Q |
| |
|
||| |||| |||| |||||||||| ||||||||||||||| ||| ||| | |||| ||||| ||||||||||| || ||||||||||||| | |
|
|
| T |
35982586 |
tggtatcctgatatagttaattaactttatttagtttctttcttttttattaatgatggttttcctttcatgacattccagatagatattttgaggaatg |
35982685 |
T |
|
| Q |
311 |
---attgtgtgtcatatgcagactgaagagccaaaaga |
345 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
35982686 |
ctaattgtgtgttatatgaagactgaagagccaaaaga |
35982723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 586 - 739
Target Start/End: Original strand, 35982970 - 35983125
Alignment:
| Q |
586 |
tacttgttggtgtacttaataaatacatccaa-acagtgactgaattatacaattataattttttaagaacttgataatgaatctaatttcagagcaaat |
684 |
Q |
| |
|
||||||||||| ||||||||||||| |||||| || | || ||| ||||| ||||||| ||||||| |||| |||||||||||||||||||| |||| |
|
|
| T |
35982970 |
tacttgttggtatacttaataaatatatccaacactgaaaccaaataatacagttataatcttttaagcacttaataatgaatctaatttcagaccaaag |
35983069 |
T |
|
| Q |
685 |
gatgt-aatatttaaaacattagtctactgacaaagatatgctgaagataataagc |
739 |
Q |
| |
|
||||| |||||||| ||||||| || ||||||||||| |||||||||||||||||| |
|
|
| T |
35983070 |
gatgtaaatatttagaacattaatccactgacaaagacatgctgaagataataagc |
35983125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 35988308 - 35988441
Alignment:
| Q |
18 |
atatttgtgctgctgttaaggaatgatagagcaaatctctattagcagaacgaagtag----aaagcttggacatgcatgcttctggtttgccaaaggag |
113 |
Q |
| |
|
||||||||||||||||| ||||||||||| | |||||||| || ||||| | ||||| | |||||| |||||| ||||||| ||||||||||| || |
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| T |
35988308 |
atatttgtgctgctgttgaggaatgataggggaaatctcttttggcagagaggagtagctagagagcttgaacatgcttgcttctagtttgccaaagaag |
35988407 |
T |
|
| Q |
114 |
atttgccctgccatttttgacagcttttgattaa |
147 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
35988408 |
atttgccctgccatttttgacagcttttaattaa |
35988441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 570 - 619
Target Start/End: Original strand, 35988921 - 35988970
Alignment:
| Q |
570 |
atctctggaacttaattacttgttggtgtacttaataaatacatccaaac |
619 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
35988921 |
atctctggaacttaattactttctggtgtaattaataaatacatccaaac |
35988970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 6e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 71 - 178
Target Start/End: Original strand, 14686140 - 14686247
Alignment:
| Q |
71 |
agtagaaagcttggacatgcatgcttctggtttgccaaaggagatttgccctgccatttttgacagcttttgattaagactaacacatcatattaattac |
170 |
Q |
| |
|
|||||| |||||| ||||||| ||||| |||||| ||||||||||| ||||| ||||||| |||||||||||| || |||||||||| |||| ||||| |
|
|
| T |
14686140 |
agtagagagcttgaacatgcaagcttcaagtttgcaaaaggagatttaccctgtcattttttacagcttttgatcaacactaacacattctattgattac |
14686239 |
T |
|
| Q |
171 |
tttctttt |
178 |
Q |
| |
|
||| |||| |
|
|
| T |
14686240 |
tttgtttt |
14686247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 14693871 - 14693949
Alignment:
| Q |
95 |
ttctggtttgccaaaggagatttgccctgccatttttgacagcttttgattaagactaacacatcatattaattacttt |
173 |
Q |
| |
|
|||| |||||| |||| |||||||||||| ||||||| ||| ||||||||||| ||| || ||| ||||||||||||| |
|
|
| T |
14693871 |
ttctagtttgctaaagaagatttgccctgtcatttttcacatcttttgattaacactgacctatcctattaattacttt |
14693949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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