View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809-Insertion-5 (Length: 868)
Name: NF1809-Insertion-5
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809-Insertion-5 |
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Alignment Details
Target: chr1 (Bit Score: 512; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 7 - 542
Target Start/End: Original strand, 16185177 - 16185712
Alignment:
| Q |
7 |
agtaaagatcctaccaagacagataaagggtacccaaccggtattgggattaagaactctcttatcatgcttggtgtgatcaactttgttgggatgttat |
106 |
Q |
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| T |
16185177 |
agtaaagatcctaccaagaccgataaagggtatccaaccggtattgggattaagaactctcttatcatgcttggtgtgatcaactttgttgggatgttat |
16185276 |
T |
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| Q |
107 |
gcacattacttgttccggaatcaaagggaaaatcgttggaagagttgagtggagagaacgagggagaaggtgccgaggccactgaacaagaaggaccgcg |
206 |
Q |
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| T |
16185277 |
gcacattacttgttccggaatcaaagggaaaatcgttggaagagttgagtggagagaacgagggagaaggtgccgaggccactgaacaagaaggaccgcg |
16185376 |
T |
|
| Q |
207 |
gtttgaaaatgtagcttgagcaagaaggatcatgaacatcacaaagtgaatttattttatgtttgcaccatatattattatttgtgacacattttagaac |
306 |
Q |
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| T |
16185377 |
gtttgaaaatgtagcttgagcaagaaggatcatgaacatcacaaagtgaatttattttatgtttgcaccatatattattatttgtgacacattttagaac |
16185476 |
T |
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| Q |
307 |
tcttaaaccatttttctttttgcattttagctactggttgttgtattcacagtaatgatgcagtcctatgcttcttggtgtaagattcaatactatgtaa |
406 |
Q |
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| T |
16185477 |
tcttaaaccatttttctgtttgcattttagctactggttgttgtattcacaataatgatgcagtcctatgcttcttggtgtaagattcaatactatgtaa |
16185576 |
T |
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| Q |
407 |
agtgtatgtctttggttgtatactatttaaaatctattcttgtattgtataatttattttagcctttgtttgagattgaggttacttgttctgtcgcatt |
506 |
Q |
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| T |
16185577 |
agtgtatgtctttggttgtatactatttaaaatctattcttgtattgtataatttattttagcctttgtttgagattgaggttacttgttctgttgcatt |
16185676 |
T |
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| Q |
507 |
taatcacaagttttcattttgttatacatacgtgtt |
542 |
Q |
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| T |
16185677 |
taatcacaagttttcattttgttatacgtacgtgtt |
16185712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 535 - 868
Target Start/End: Original strand, 16188965 - 16189297
Alignment:
| Q |
535 |
tacgtgttgttctaaaatgtgtttataccttcgtggggttcgctccaatcctttacaaatttggtttataccttagtgtgctcgttaaaatgtgttttcc |
634 |
Q |
| |
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||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16188965 |
tacgtgttgttctaaaatgtgtt-ataccttcatggggttcgctccaatcctttacaaatttggtttataccttagtgtgctcgttaaaatgtgttttcc |
16189063 |
T |
|
| Q |
635 |
cactgacctagatgtatactctatataaggaaagttggttggcgatgcgagtctaacagaggcgactcccttggcattactcagtatttgcgatgcggtg |
734 |
Q |
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| T |
16189064 |
cactgacctagatgtatactctatataaggaaagttggttggcgatgcgagtctaacagaggcgactcccttggcattactcggtatttgcgatgcggtg |
16189163 |
T |
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| Q |
735 |
ctcattgccaacaatgcatgatagacagtagaaaacaccttaccttataatgaagtctcgcgttatggggctcatagtccgcgatgcgatattgactata |
834 |
Q |
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| T |
16189164 |
ctcattgccaacaatgcatgatagacagtagaaaacaccttaccttataatgaagtctcgcgttatggggctcatagtccgcgatgcgatattgactata |
16189263 |
T |
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| Q |
835 |
gctgactcattggtttcttcaatccttgctccat |
868 |
Q |
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| T |
16189264 |
gctgactcattggtttcttcaatccttgctccat |
16189297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 7 - 201
Target Start/End: Original strand, 16224567 - 16224761
Alignment:
| Q |
7 |
agtaaagatcctaccaagacagataaagggtacccaaccggtattgggattaagaactctcttatcatgcttggtgtgatcaactttgttgggatgttat |
106 |
Q |
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| T |
16224567 |
agtaaagatcctaccaagaccgataaagggtacccaaccggtattgggattaagaactctcttatcatgcttggtgtgatcaactttgttgggatgttat |
16224666 |
T |
|
| Q |
107 |
gcacattacttgttccggaatcaaagggaaaatcgttggaagagttgagtggagagaacgagggagaaggtgccgaggccactgaacaagaagga |
201 |
Q |
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| T |
16224667 |
gcacattacttgttccggaatcaaagggaaaatcgttggaagagttaagtggagagaatgagggagaaggtgccgaggccactgagcaagaagga |
16224761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 7 - 174
Target Start/End: Complemental strand, 16174185 - 16174018
Alignment:
| Q |
7 |
agtaaagatcctaccaagacagataaagggtacccaaccggtattgggattaagaactctcttatcatgcttggtgtgatcaactttgttgggatgttat |
106 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16174185 |
agtaaagatcctaccaagaccgataaagggtacccaaccggtattgggattaagaactctcttatcatgcttggtgtgatcaactttgttgggatgttat |
16174086 |
T |
|
| Q |
107 |
gcacattacttgttccggaatcaaagggaaaatcgttggaagagttgagtggagagaacgagggagaa |
174 |
Q |
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|||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| || |||||| |
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| T |
16174085 |
gcactttacttgtcccggaatcaaagggaaaatcattggaagagttgagtggagagaatgaaggagaa |
16174018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 347 - 427
Target Start/End: Complemental strand, 16173668 - 16173588
Alignment:
| Q |
347 |
ttgtattcacagtaatgatgcagtcctatgcttcttggtgtaagattcaatactatgtaaagtgtatgtctttggttgtat |
427 |
Q |
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| T |
16173668 |
ttgtattcacaataatgatatagttctttgcttcttggtgtaagaacaaatcctatgtaaagtgtttgcctttggttgtat |
16173588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 800 - 868
Target Start/End: Original strand, 26807974 - 26808042
Alignment:
| Q |
800 |
tggggctcatagtccgcgatgcgatattgactatagctgactcattggtttcttcaatccttgctccat |
868 |
Q |
| |
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| T |
26807974 |
tggggctcatatctcgcgatgcgagatagacagtagctgactccttggtttcttcaatccttgctccat |
26808042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 341 - 386
Target Start/End: Original strand, 16225121 - 16225166
Alignment:
| Q |
341 |
tggttgttgtattcacagtaatgatgcagtcctatgcttcttggtg |
386 |
Q |
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| T |
16225121 |
tggttgttgtattcacaataatgatgtagttctatgcttcttggtg |
16225166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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