View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809-Insertion-7 (Length: 740)
Name: NF1809-Insertion-7
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809-Insertion-7 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 386 - 740
Target Start/End: Original strand, 52710588 - 52710940
Alignment:
| Q |
386 |
aataaaatgacagatcatacgagttaattaaactgttattgttatcatttttacgagttgtgtaatgctatttatgtccctctgaattaataataataat |
485 |
Q |
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| T |
52710588 |
aataaaatgacagatcatacgagttaattaaactgttattgttatcatttttacgagttgtgtaatgctat--atgtccctctgaattaataataataat |
52710685 |
T |
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| Q |
486 |
agtttctctgaaagatcctcgttgcacatcacaaaatactgcccaacttccatgcccatgaacgtttacaatgcgcggcgttagccttataatcaatcaa |
585 |
Q |
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| T |
52710686 |
agtttctctgaaagatcctcgttgcacatcacaaaatactgcccaacttccatgcccatgaacgtttacaatgcgcggcgttagccttataatcaatcaa |
52710785 |
T |
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| Q |
586 |
ttatattcaatattcatacgcagatatttacgaactctcatataatttccgtgtctctaacctaccttgacatatctataaccatgattaccggcaagga |
685 |
Q |
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| T |
52710786 |
ttatattcaatatttatacgcagatatttacgaactctcatataatttccgtgtctctaacctaccttgacatatctataaccatgattaccggcaagga |
52710885 |
T |
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| Q |
686 |
catttacaatgttttagcggcgattgtgccactatatgtcgctatgatattagca |
740 |
Q |
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| T |
52710886 |
catatacaatgttttagcggcgattgtgccactatatgtcgctatgatattagca |
52710940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 70 - 356
Target Start/End: Original strand, 52710295 - 52710577
Alignment:
| Q |
70 |
ctacattctcaaagacaccctcttgataacatcagctgagacaatcttaacaaattataaaaccgaaa------------gtatatttatattttcattg |
157 |
Q |
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| T |
52710295 |
ctacattctcaaagacaccctcttgataacatcagctgagacaatcttaacaaattgtaaaaccgaaattgtactagctagtatatttatattttcattg |
52710394 |
T |
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| Q |
158 |
ttacattctgttatagccttgaattgaccgatggaaggctacgagaatttagtttgaatcacatttgtcatctttatatcaataaaaggccaatgtccac |
257 |
Q |
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| T |
52710395 |
ttacattctgttatagccttgaattgaccgatggaaggctacgagaatttagtttgaatcacatttgtcatctttatatcaataaaaggccaatgtccac |
52710494 |
T |
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| Q |
258 |
taattcacagcacaattccaactctaacaaatacattgttgtaacaataatctgatgaagtttactcgctggtgttctaattatttctcactcaacaag |
356 |
Q |
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| T |
52710495 |
taattcacagcacaattccaactctaaca----------------aataatctgatgaagtttactcgctggtgttctaattatttctcacacaacaag |
52710577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 641 - 740
Target Start/End: Original strand, 52716149 - 52716248
Alignment:
| Q |
641 |
tctaacctaccttgacatatctataaccatgattaccggcaaggacatttacaatgttttagcggcgattgtgccactatatgtcgctatgatattagca |
740 |
Q |
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| T |
52716149 |
tctaatctaccttgacctatctataaccatgattaccggtaaggatatatacgatgttttcgcagcaattgtgccgctatatgttgctatgatattagca |
52716248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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