View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1809-Insertion-8 (Length: 720)
Name: NF1809-Insertion-8
Description: NF1809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1809-Insertion-8 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 219 - 720
Target Start/End: Complemental strand, 42911832 - 42911335
Alignment:
| Q |
219 |
tatacttctagtttctagcaaatatatttccaatatagaataacgtagtaattgaagctacgaagctaaacatgtgtgtgcagtaggaccacatgcatga |
318 |
Q |
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| T |
42911832 |
tatatttctagtttctagcaaatatatttccaatattgaataacgtaataattgatgctacgaagttaaac--gtgtgtgcagtaggaccacatgcatga |
42911735 |
T |
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| Q |
319 |
gtaatcgacacgaaacaacttacaattgttaatgaataaaaaagagttttgtggaacgtggatgaacatagaagttaaatatccaatgtactgctactaa |
418 |
Q |
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| T |
42911734 |
ttaatcgacacgaaacaactcacaattgttaatgaattaagaagagttttgtggaacgtggatgaacatagaagttaaatatccaatgtactgctactaa |
42911635 |
T |
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| Q |
419 |
gaggaaaggattaaaaa-tgtggtaagtacgagggtttggcggaagaattaaatgcgttgaggagggagacaataatttgaagaatgtcaatggaataag |
517 |
Q |
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| T |
42911634 |
gaggaaaggattaaaaaatgtggtaagtacgagggtttggcggaagaattaaatgcgttgaggagggagacaataatttgaagaatgtcaatggaataag |
42911535 |
T |
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| Q |
518 |
agatggtcatgaaaggtccgagaagtaaaagccaaaacactggcaatgttttggtccccaccgaattgtgacttccaaaaacaaagtggtagagtagagg |
617 |
Q |
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| T |
42911534 |
agatggtcatgaaaggtccaagaagtaaaagccaaaacactggcaatg-tttggtccccaccgaattgtgacttccaaaaacaaagtggtagagtagag- |
42911437 |
T |
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| Q |
618 |
agagaatctcaccgagctttggagtttgtgtgtgtattggtcaatccttccacttgcagccgtaggctttacagcaatgcaactcaatttctcttccttc |
717 |
Q |
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| T |
42911436 |
-gagaatctcacacagctttggagtttgtgtgtgtattggtcaatccttccacttgcagccgtaggctttacagcaatgtaacgcaatttctcttccatc |
42911338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 8 - 222
Target Start/End: Complemental strand, 42912079 - 42911868
Alignment:
| Q |
8 |
aatccggcatgcattgcgtccaatatggatgtgaatatgcgagataataatgagaagaaaagaaacccgtgagttctgtttacatttacagtaacactat |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
42912079 |
aatccggcatgcattgcgtccaatatggatgtgaatatgcgagataataatgagaagaaaagaaacccgtgagttccatttacattgacagtaacactaa |
42911980 |
T |
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| Q |
108 |
atattattacttgtgtcgccatgtatttgactcctatgtcctatcctatcttcatgcctttgggttttattatgcaatcaaacagaataagacactcaac |
207 |
Q |
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| T |
42911979 |
atatta---cttgtgtcgccatgtatttgactcctatgtcctatcctatcttcatgcctttgggttttattatgcaatcaaacagaataagacactcaac |
42911883 |
T |
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| Q |
208 |
ttaattctttatata |
222 |
Q |
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| T |
42911882 |
ttaattctttatata |
42911868 |
T |
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