View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18090_low_1 (Length: 443)
Name: NF18090_low_1
Description: NF18090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18090_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 119 - 438
Target Start/End: Original strand, 34547742 - 34548060
Alignment:
| Q |
119 |
cttattactagttattagaatttcggattgagattggttcaaaccttactcaatgagattgtaagatgagaaatgttcccacttacaaagctaacttcaa |
218 |
Q |
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| T |
34547742 |
cttattactagttattagaatttcggattgagattggttcaaaccttactcaatgagattgtaagatgagaaatgttcccacttacaaagctaacttcaa |
34547841 |
T |
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| Q |
219 |
acattatcttatccaatattacattcttactcgatcacgttaaagataaaatgttcaaaatgtgatctgagtgagccgataatagtaatctaatagcagg |
318 |
Q |
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| T |
34547842 |
acattatcttattcaatattacattcttactcgatca-gctaaagacaaaatgtttaaagtgtgatatgagtgagccgataatagtaatctaatagcagg |
34547940 |
T |
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| Q |
319 |
tgattcaatgagttttagatggattttaaccacgtcgtctgattttggatctaattcaatctttacaaaatggctagtaaggtgatgatttctcccacat |
418 |
Q |
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| T |
34547941 |
cgattcaatgagttttagatggattttaactacgtcgtctgattttggatctaattcaatctttacaaaatggctagtaaggtgatgatttctcccacat |
34548040 |
T |
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| Q |
419 |
aaaacacatattcatctcac |
438 |
Q |
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| T |
34548041 |
aaaacacatattcatgtcac |
34548060 |
T |
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