View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18090_low_2 (Length: 386)
Name: NF18090_low_2
Description: NF18090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18090_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 14 - 367
Target Start/End: Complemental strand, 14748618 - 14748265
Alignment:
| Q |
14 |
aaattattcttgtcttgtcttctgatactctccaccaacccatcatgcctaaattgtactacaaatttggtatgaagaatttagatcccttgaaatattt |
113 |
Q |
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| T |
14748618 |
aaattattcttgtcttgtcttctgatactctccaccaacccatcatgcctaaattgtattccaaatttggtatgaagaatttagatcccttgaaatattt |
14748519 |
T |
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| Q |
114 |
tatgggtatatctattacacgacattaataaggtcttattattttactaaaagaaatatttcgaagaaatcaatgagcaagaacatatgtcttcttgcaa |
213 |
Q |
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| T |
14748518 |
tatgggtatatctattacacgacattaataaggtcttattattttactaaaagaaatatttcgaagaaatcaatgagcaagaacatatgtcttcttgcaa |
14748419 |
T |
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| Q |
214 |
acaatcttctacagcggttgacacacaagttaaactcagtggtgcttcaagtaatccatatcatgacccaattgaatatcgcactattgtcaaagcctta |
313 |
Q |
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| T |
14748418 |
accatcttctacaccggttgacacacaagttaaactcagtggtgcttcaagtaatccatatcatgacccaattgaatatcgcactattgttaaagcctta |
14748319 |
T |
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| Q |
314 |
caatacttgacatttacaagaccaattatctcctaggtcgttcaacaaatgtgt |
367 |
Q |
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| T |
14748318 |
caatacttgacatttacaagactaagtatctcctaggtcgttcaacaaatgtgt |
14748265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 279
Target Start/End: Original strand, 24687969 - 24688049
Alignment:
| Q |
199 |
tatgtcttcttgcaaacaatcttctacagcggttgacacacaagttaaactcagtggtgcttcaagtaatccatatcatga |
279 |
Q |
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| T |
24687969 |
tatgtcttcttgcaaaccatctgctacaccgatggacacaaaaggtaaactaagtggctcttccagaaattcatatcatga |
24688049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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